RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SLC43A1O75387 559 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 THY1P04216 161 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 HOXB1P14653 301 aaPredicted RBP13.01□□□□□ -0.33
SS18-212ENST00000579061 NQO1P15559 274 aaKnown RBP13.01□□□□□ -0.33
SS18-212ENST00000579061 KDELR2P33947 212 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 PRPS1P60891 318 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 PUDPQ08623 228 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 C9orf135Q5VTT2 229 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 KLHL24Q6TFL4 600 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 CARM1Q86X55 608 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 UEVLDQ8IX04 471 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 SLC15A3Q8IY34 581 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 WFDC11Q8NEX6 87 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 KBTBD8Q8NFY9 601 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 OR1K1Q8NGR3 316 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 OR5J2Q8NH18 312 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 MOGAT1Q96PD6 335 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 ELAC2Q9BQ52 826 aaKnown RBP13.01□□□□□ -0.33
SS18-212ENST00000579061 GRIP2Q9C0E4 1043 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 MYLK2Q9H1R3 596 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 DLL4Q9NR61 685 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 ZNF701Q9NV72 531 aaPredicted RBP13.01□□□□□ -0.33
SS18-212ENST00000579061 CMTM6Q9NX76 183 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 USP22Q9UPT9 525 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 SH3GLB1Q9Y371 365 aa13.01□□□□□ -0.33
SS18-212ENST00000579061 A0A1W2PR80 420 aa13□□□□□ -0.33
SS18-212ENST00000579061 PLPP3O14495 311 aa13□□□□□ -0.33
SS18-212ENST00000579061 UPK3AO75631 287 aa13□□□□□ -0.33
SS18-212ENST00000579061 HPRP00739 348 aa13□□□□□ -0.33
SS18-212ENST00000579061 CBLP22681 906 aa13□□□□□ -0.33
SS18-212ENST00000579061 CD40P25942 277 aa13□□□□□ -0.33
SS18-212ENST00000579061 PRDX6P30041 224 aa13□□□□□ -0.33
SS18-212ENST00000579061 PTH2RP49190 550 aa13□□□□□ -0.33
SS18-212ENST00000579061 ZNF83P51522 516 aa13□□□□□ -0.33
SS18-212ENST00000579061 SEC24CP53992 1094 aa13□□□□□ -0.33
SS18-212ENST00000579061 RPS4XP62701 263 aaKnown RBP13□□□□□ -0.33
SS18-212ENST00000579061 IL1RL1Q01638 556 aa13□□□□□ -0.33
SS18-212ENST00000579061 PMS2P3Q13401 168 aa13□□□□□ -0.33
SS18-212ENST00000579061 Q5PR19 223 aa13□□□□□ -0.33
SS18-212ENST00000579061 HMBOX1Q6NT76 420 aa13□□□□□ -0.33
SS18-212ENST00000579061 C8orf82Q6P1X6 216 aaPredicted RBP13□□□□□ -0.33
SS18-212ENST00000579061 NHLRC1Q6VVB1 395 aa13□□□□□ -0.33
SS18-212ENST00000579061 WDR88Q6ZMY6 472 aa13□□□□□ -0.33
SS18-212ENST00000579061 LINGO2Q7L985 606 aa13□□□□□ -0.33
SS18-212ENST00000579061 PXKQ7Z7A4 578 aa13□□□□□ -0.33
SS18-212ENST00000579061 TSPYL5Q86VY4 417 aaPredicted RBP13□□□□□ -0.33
SS18-212ENST00000579061 TREML1Q86YW5 311 aa13□□□□□ -0.33
SS18-212ENST00000579061 GPR137CQ8N3F9 429 aa13□□□□□ -0.33
SS18-212ENST00000579061 C10orf53Q8N6V4 93 aa13□□□□□ -0.33
SS18-212ENST00000579061 PIK3C3Q8NEB9 887 aa13□□□□□ -0.33
SS18-212ENST00000579061 SMAP2Q8WU79 429 aaPredicted RBP13□□□□□ -0.33
SS18-212ENST00000579061 NEUROG1Q92886 237 aa13□□□□□ -0.33
SS18-212ENST00000579061 CMTM5Q96DZ9 223 aa13□□□□□ -0.33
SS18-212ENST00000579061 LRR1Q96L50 414 aa13□□□□□ -0.33
SS18-212ENST00000579061 ALKBH3Q96Q83 286 aaPredicted RBP13□□□□□ -0.33
SS18-212ENST00000579061 FKRPQ9H9S5 495 aa13□□□□□ -0.33
SS18-212ENST00000579061 MOV10Q9HCE1 1003 aaKnown RBP13□□□□□ -0.33
SS18-212ENST00000579061 FAIMQ9NVQ4 179 aa13□□□□□ -0.33
SS18-212ENST00000579061 CISD1Q9NZ45 108 aaKnown RBP13□□□□□ -0.33
SS18-212ENST00000579061 SLC7A7Q9UM01 511 aa13□□□□□ -0.33
SS18-212ENST00000579061 LAMP3Q9UQV4 416 aa13□□□□□ -0.33
SS18-212ENST00000579061 ARPC4-TTLL3A0A0A6YYG9 625 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 OVOL3O00110 214 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 SNX3O60493 162 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 OR5F1O95221 314 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 IGF2P01344 180 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 THRBP10828 461 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 LSP1P33241 339 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 RBM34P42696 430 aaKnown RBP12.99□□□□□ -0.33
SS18-212ENST00000579061 CDH11P55287 796 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 SELENOWP63302 87 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 SLC25A3Q00325 362 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 ROR2Q01974 943 aaKnown RBP12.99□□□□□ -0.33
SS18-212ENST00000579061 LGALS3BPQ08380 585 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 ZP4Q12836 540 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 ZNF74Q16587 644 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 TBRG1Q3YBR2 411 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 CYBRD1Q53TN4 286 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 ANKRD16Q6P6B7 361 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 TMEM123Q8N131 208 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 DEPDC4Q8N2C3 294 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 LZICQ8WZA0 190 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 BCL2L2Q92843 193 aaPredicted RBP12.99□□□□□ -0.33
SS18-212ENST00000579061 PERPQ96FX8 193 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 OR2M2Q96R28 347 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 PRSS27Q9BQR3 290 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 NANSQ9NR45 359 aa12.99□□□□□ -0.33
SS18-212ENST00000579061 GMNCA6NCL1 334 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 LRRN3E7EW58 273 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 M0R1B8 84 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 CH25HO95992 272 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 SOD3P08294 240 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 ADORA3P0DMS8 318 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 HLA-DOBP13765 273 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 CDH2P19022 906 aaPredicted RBP12.98□□□□□ -0.33
SS18-212ENST00000579061 PTNP21246 168 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 DRD4P21917 467 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 TAS2R41P59536 307 aa12.98□□□□□ -0.33
SS18-212ENST00000579061 POU3F1Q03052 451 aaPredicted RBP12.98□□□□□ -0.33
SS18-212ENST00000579061 LIPEQ05469 1076 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms