RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SLC19A2O60779 497 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SERPINA3P01011 423 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 THBS2P35442 1172 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 FBXW4P57775 412 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC26A5P58743 744 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 CCDC58Q4VC31 144 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 PEAR1Q5VY43 1037 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SFXN4Q6P4A7 337 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 PAPD4Q6PIY7 484 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC16A9Q7RTY1 509 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 GRINAQ7Z429 371 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 MAML2Q8IZL2 1156 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 IFI44Q8TCB0 444 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 THAP3Q8WTV1 239 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 HPS1Q92902 700 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 NEDD4LQ96PU5 975 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 ADAM30Q9UKF2 790 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 LAMTOR5O43504 91 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 MT-ATP6P00846 226 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 EDNRAP25101 427 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 PTBP1P26599 531 aaKnown RBP eCLIP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 PSMB10P40306 273 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 RPS11P62280 158 aaKnown RBP eCLIP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 ZXDAP98168 799 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 P2RY14Q15391 338 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 COL28A1Q2UY09 1125 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 ZNF684Q5T5D7 378 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 LCN10Q6JVE6 187 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 MAMDC2Q7Z304 686 aaPredicted RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 PPP1R3BQ86XI6 285 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 MISPQ8IVT2 679 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 KCTD12Q96CX2 325 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SPSB2Q99619 263 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 TTYH2Q9BSA4 534 aa19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 SRA1Q9HD15 236 aaKnown RBP19.12■□□□□ 0.65
CCDC88B-208ENST00000492980 TRBV2A0A0J9YWF9 115 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 LINC00854A0A1B0GVQ3 168 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 TMEM200CA6NKL6 621 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 PAMR1Q6UXH9 720 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 TIGD4Q8IY51 512 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 IL17RDQ8NFM7 739 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 RPS4Y2Q8TD47 263 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC25A36Q96CQ1 311 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 SACM1LQ9NTJ5 587 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 OCIAD1Q9NX40 245 aa19.11■□□□□ 0.65
CCDC88B-208ENST00000492980 TRBV11-1A0A0K0K1C0 115 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 A8MVM7 634 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 ELK1P19419 428 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 RIN1Q13671 783 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 CARTPTQ16568 116 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 SGCBQ16585 318 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 PHF19Q5T6S3 580 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 FAM69AQ5T7M9 428 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 OR6V1Q8N148 313 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 OR2T4Q8NH00 348 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 HGDQ93099 445 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 RASD1Q9Y272 281 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 KLHDC2Q9Y2U9 406 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 PATE3B3GLJ2 98 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 RENP00797 406 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 IL18Q14116 193 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 C1orf140Q5VVS0 124 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 IL20RBQ6UXL0 311 aa19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 UBL7Q96S82 380 aaPredicted RBP19.1■□□□□ 0.65
CCDC88B-208ENST00000492980 TRAV1-2A0A0B4J238 106 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 FAM25AB3EWG3 89 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 FAM25CB3EWG5 89 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 FAM25GB3EWG6 89 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 C11orf98E9PRG8 122 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 PSMD9O00233 223 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 HLA-DQB1P01920 261 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 EEF1A1P5Q5VTE0 462 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 CPEB2Q7Z5Q1 589 aaKnown RBP19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 Q8N402 240 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 RNF166Q96A37 237 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 PDCD1LG2Q9BQ51 273 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 B3GAT2Q9NPZ5 323 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 CPAMD8Q8IZJ3 1885 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 C2orf72A6NCS6 295 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 B4DXG7 233 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 UCHL1P09936 223 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC2A2P11168 524 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 DAB2P98082 770 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC25A35Q3KQZ1 300 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 OR5M10Q6IEU7 315 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 CDC20BQ86Y33 519 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 STK35Q8TDR2 534 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 CTRCQ99895 268 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 CRB3Q9BUF7 120 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 OR11A1Q9GZK7 315 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC22A4Q9H015 551 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 C11orf54Q9H0W9 315 aaPredicted RBP19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 SYT4Q9H2B2 425 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 SLC26A1Q9H2B4 701 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 INIPQ9NRY2 104 aa19.09■□□□□ 0.65
CCDC88B-208ENST00000492980 A0A1W2PPK0 400 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 ANKUB1A6NFN9 424 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 TVP23AA6NH52 213 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 PLA2G10O15496 165 aa19.08■□□□□ 0.64
CCDC88B-208ENST00000492980 ARHGEF9O43307 516 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms