RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRSS42Q7Z5A4 293 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 L3MBTL4Q8NA19 623 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR4K15Q8NH41 348 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 WFDC5Q8TCV5 224 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ARRDC3Q96B67 414 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR11A1Q9GZK7 315 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 SLC22A11Q9NSA0 550 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ZNF443Q9Y2A4 671 aaPredicted RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 PLEKHM1Q9Y4G2 1056 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 A6NIZ1 184 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 VSTM2BA6NLU5 285 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 CD300LBA8K4G0 201 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TNFSF12O43508 249 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR2F2O95006 317 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 PGFP49763 221 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 SNU13P55769 128 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 TAS2R30P59541 319 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 RAP1BP61224 184 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 RAP1AP62834 184 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR2F1Q13607 317 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 SNTB1Q13884 538 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 BCDIN3DQ7Z5W3 292 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 FRMD1Q8N878 549 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR5K2Q8NHB8 316 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TANKQ92844 425 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR7D2Q96RA2 312 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 LMAN1LQ9HAT1 526 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 C1orf123Q9NWV4 160 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 LY75O60449 1722 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TMEM200CA6NKL6 621 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 RAB31Q13636 194 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 GPR18Q14330 331 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 OR1Q1Q15612 314 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TECPR1Q7Z6L1 1165 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 CDS1Q92903 461 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 STRADBQ9C0K7 418 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ZNF337Q9Y3M9 751 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 NUMBLQ9Y6R0 609 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 EVPLQ92817 2033 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TXNDC12O95881 172 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 MMP2P08253 660 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 TAGLN2P37802 199 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 TLE4Q04727 773 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 MRPL58Q14197 206 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 CTF1Q16619 201 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 XKR7Q5GH72 579 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ZMAT1Q5H9K5 638 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 SPPL3Q8TCT6 385 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ZNF681Q96N22 645 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 MCOLN1Q9GZU1 580 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 RBM38Q9H0Z9 239 aaKnown RBP10.67□□□□□ -0.7
VPS39-201ENST00000318006 MED20Q9H944 212 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 KLHL13Q9P2N7 655 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 SLC22A7Q9Y694 548 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 CDK5RAP2Q96SN8 1893 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TCRBV5S2A0A599 114 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 GABARAPH6UMI1 98 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 LAMTOR5O43504 91 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 PAPLNO95428 1278 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 SPNP16150 400 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 ANXA7P20073 488 aaKnown RBP10.66□□□□□ -0.7
VPS39-201ENST00000318006 PDE7AQ13946 482 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 CLLU1Q5K131 121 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TEX261Q6UWH6 196 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 LIX1LQ8IVB5 337 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 OR51Q1Q8NH59 317 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 ASB17Q8WXJ9 295 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 GABARAPL3Q9BY60 117 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 HHATLQ9HCP6 504 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 RLIMQ9NVW2 624 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 U3KQ87 197 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TMEM212A6NML5 194 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 FAM227AF5H4B4 570 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 MFGE8Q08431 387 aaPredicted RBP10.66□□□□□ -0.7
VPS39-201ENST00000318006 SQSTM1Q13501 440 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 NPRL2Q8WTW4 380 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TOE1Q96GM8 510 aaKnown RBP10.66□□□□□ -0.7
VPS39-201ENST00000318006 INSM2Q96T92 566 aaPredicted RBP10.66□□□□□ -0.7
VPS39-201ENST00000318006 LPAR4Q99677 370 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 SRRQ9GZT4 340 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 ELOVL3Q9HB03 270 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 PATZ1Q9HBE1 687 aaKnown RBP10.66□□□□□ -0.7
VPS39-201ENST00000318006 NOX4Q9NPH5 578 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 PRSS16Q9NQE7 514 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 INIPQ9NRY2 104 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 ASIC5Q9NY37 505 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 SBK2P0C263 348 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 OR8G3PP0DMU2 310 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 F3P13726 295 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 AKR1C1Q04828 323 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TMEM207Q6UWW9 146 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 SLCO4C1Q6ZQN7 724 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TMEM151BQ8IW70 566 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 OR6T1Q8NGN1 323 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 OR13C2Q8NGS9 318 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 RAB3CQ96E17 227 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 GPR78Q96P69 363 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 TMEM38AQ9H6F2 299 aa10.66□□□□□ -0.7
VPS39-201ENST00000318006 KCNIP1Q9NZI2 227 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms