RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PRKCDQ05655 676 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 CCNIQ14094 377 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 EXOC3L2Q2M3D2 409 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 PLXDC2Q6UX71 529 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 NCCRP1Q6ZVX7 275 aaPredicted RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 TSEN54Q7Z6J9 526 aaKnown RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 CCDC71Q8IV32 467 aaPredicted RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 UEVLDQ8IX04 471 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 PAPD5Q8NDF8 572 aaKnown RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 ANKK1Q8NFD2 765 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 OR9K2Q8NGE7 335 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ITLN2Q8WWU7 325 aaPredicted RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 LIPHQ8WWY8 451 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 DUS3LQ96G46 650 aaKnown RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 OXGR1Q96P68 337 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 MOGAT1Q96PD6 335 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 KCNJ16Q9NPI9 418 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 MEPEQ9NQ76 525 aaPredicted RBP8.98□□□□□ -0.97
USP3-216ENST00000559873 ARMC1Q9NVT9 282 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 AP4S1Q9Y587 144 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 NOX1Q9Y5S8 564 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 FLNCQ14315 2725 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 DOCK7Q96N67 2140 aa8.98□□□□□ -0.97
USP3-216ENST00000559873 ARHGAP21Q5T5U3 1957 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 TRBV4-1A0A0J9YWV2 114 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 LOC102725191A0A1B0GVB3 256 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CLEC18AA5D8T8 446 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 ARRDC5A6NEK1 342 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 OR6C65A6NJZ3 312 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 FAM90A27PA6NNH2 459 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 EEF1E1-BLOC1S5C9J1V9 151 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 MSTNO14793 375 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 EEF1E1O43324 174 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 PIP5K1CO60331 668 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 MRPL33O75394 65 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 TNFSF13O75888 250 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CCNB2O95067 398 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 ASAH2BP0C7U1 165 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CD8BP10966 210 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CBLP22681 906 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 AHCYP23526 432 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 FPR3P25089 353 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 DNAJA1P31689 397 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 PEX19P40855 299 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 ASCL1P50553 236 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 HMGA2P52926 109 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 PRPS1P60891 318 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 POU3F1Q03052 451 aaPredicted RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 FOXF2Q12947 444 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 KPNB1Q14974 876 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 GUSBP1Q15486 140 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CLEC18BQ6UXF7 455 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CASP12Q6UXS9 341 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 TMPRSS11FQ6ZWK6 438 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 SLC46A3Q7Z3Q1 461 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 PXKQ7Z7A4 578 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CCDC103Q8IW40 242 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 TUSC5Q8IXB3 177 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 CLEC18CQ8NCF0 446 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 TMEM45BQ96B21 275 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 APH1AQ96BI3 265 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 FAM46AQ96IP4 442 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 BDH2Q9BUT1 245 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 C20orf141Q9NUB4 165 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 STX18Q9P2W9 335 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 FOXD3Q9UJU5 478 aaPredicted RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 CLEC4AQ9UMR7 237 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 RCE1Q9Y256 329 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 HIF3AQ9Y2N7 669 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 NOSIPQ9Y314 301 aaKnown RBP8.97□□□□□ -0.97
USP3-216ENST00000559873 FLVCR1Q9Y5Y0 555 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 KIAA1549Q9HCM3 1950 aa8.97□□□□□ -0.97
USP3-216ENST00000559873 NCOA6Q14686 2063 aaPredicted RBP8.96□□□□□ -0.97
USP3-216ENST00000559873 A0A1W2PRG6 482 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 WIPF3A6NGB9 483 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 ZNF814B7Z6K7 855 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 MCIDASD6RGH6 385 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 LRRN3E7EW58 273 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 BLOC1S5-TXNDC5H3BN57 136 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 PLPP3O14495 311 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 CLOCKO15516 846 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 RNF13O43567 381 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 SMNDC1O75940 238 aaKnown RBP eCLIP8.96□□□□□ -0.984e-9■■■□□ 17.4
USP3-216ENST00000559873 CNOT4O95628 575 aaKnown RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 NR2C1P13056 603 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 GSTM3P21266 225 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 KIR2DL2P43627 348 aaPredicted RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 GPR4P46093 362 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 LIMS1P48059 325 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 DAP3P51398 398 aaKnown RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 P2RY4P51582 365 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 LTBQ06643 244 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 RPL18Q07020 188 aaKnown RBP8.96□□□□□ -0.98
USP3-216ENST00000559873 ZP4Q12836 540 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 SLC17A1Q14916 467 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 SEC23BQ15437 767 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 ATP6AP1Q15904 470 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 ALG10Q5BKT4 473 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 RPL13AP3Q6NVV1 102 aa8.96□□□□□ -0.98
USP3-216ENST00000559873 VWA1Q6PCB0 445 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms