RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 PTAFRP25105 342 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 CDH12P55289 794 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 TSC22D1Q15714 1073 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 RABL3Q5HYI8 236 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 TSPO2Q5TGU0 170 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 ALKBH2Q6NS38 261 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 PRSS57Q6UWY2 283 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.4□□□□□ -0.74
HDAC4-216ENST00000544989 SPATA21Q7Z572 469 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 COMTD1Q86VU5 262 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 DEPDC4Q8N2C3 294 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 OR2T12Q8NG77 320 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 TMEM171Q8WVE6 324 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 LZICQ8WZA0 190 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 TAAR8Q969N4 342 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 FBXW5Q969U6 566 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 TAMM41Q96BW9 452 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 CMTM5Q96DZ9 223 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 ZNF385AQ96PM9 386 aaKnown RBP10.4□□□□□ -0.74
HDAC4-216ENST00000544989 HOPXQ9BPY8 73 aaPredicted RBP10.4□□□□□ -0.74
HDAC4-216ENST00000544989 EFCAB1Q9HAE3 211 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 SLC7A10Q9NS82 523 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 FAIMQ9NVQ4 179 aa10.4□□□□□ -0.74
HDAC4-216ENST00000544989 PRRC2AP48634 2157 aaKnown RBP10.4□□□□□ -0.74
HDAC4-216ENST00000544989 ARID1AO14497 2285 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 IGKV1D-42A0A075B6H8 117 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ELOVL7A1L3X0 281 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 M0R082 166 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 M0R3H8 397 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 CLOCKO15516 846 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 SLC43A1O75387 559 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 OPN1SWP03999 348 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ITGA5P08648 1049 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 COX4I1P13073 169 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 CD99P14209 185 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 HOXB1P14653 301 aaPredicted RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 FOSL1P15407 271 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 NQO1P15559 274 aaKnown RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 PAX1P15863 534 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 GRPRP30550 384 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 IFNA8P32881 189 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 NTF4P34130 210 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 PRPS1P60891 318 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 IL1RL1Q01638 556 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 BSPH1Q075Z2 132 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 SF3A3Q12874 501 aaKnown RBP eCLIP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 GABRA6Q16445 453 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ENTPD8Q5MY95 495 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 HMBOX1Q6NT76 420 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 NIPAL3Q6P499 406 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 TTC33Q6PID6 262 aaPredicted RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 HACD2Q6Y1H2 254 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 P3H2Q8IVL5 708 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 UEVLDQ8IX04 471 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 GPR32P1Q8NGA4 272 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 OR6T1Q8NGN1 323 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF417Q8TAU3 575 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ADAMTS16Q8TE57 1224 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 AKAP1Q92667 903 aaKnown RBP eCLIP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 RCN3Q96D15 328 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 SLC41A3Q96GZ6 507 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF583Q96ND8 569 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF587Q96SQ5 575 aaPredicted RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 RSPO3Q9BXY4 272 aaPredicted RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 GSX2Q9BZM3 304 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 MRPL39Q9NYK5 338 aaKnown RBP10.39□□□□□ -0.75
HDAC4-216ENST00000544989 ARMCX1Q9P291 453 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 NOX1Q9Y5S8 564 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 SLC25A15Q9Y619 301 aa10.39□□□□□ -0.75
HDAC4-216ENST00000544989 HTR3EA5X5Y0 456 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 RPL36A-HNRNPH2H7BZ11 118 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 TPST2O60704 377 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 BGLAPP02818 100 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 THRBP10828 461 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 PRDX6P30041 224 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 RBM34P42696 430 aaKnown RBP10.38□□□□□ -0.75
HDAC4-216ENST00000544989 NKX6-1P78426 367 aaPredicted RBP10.38□□□□□ -0.75
HDAC4-216ENST00000544989 PUDPQ08623 228 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 PMS2P3Q13401 168 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 NPTX1Q15818 432 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 ZNF672Q499Z4 452 aaPredicted RBP10.38□□□□□ -0.75
HDAC4-216ENST00000544989 SEZ6L2Q6UXD5 910 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 LINC00114Q6XXX2 140 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 PXKQ7Z7A4 578 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 CPLX4Q7Z7G2 160 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 EPHX4Q8IUS5 362 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 CCDC36Q8IYA8 594 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 MICU2Q8IYU8 434 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 GPR137CQ8N3F9 429 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 C10orf53Q8N6V4 93 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 PIK3C3Q8NEB9 887 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 OR52N5Q8NH56 324 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 VANGL1Q8TAA9 524 aaPredicted RBP10.38□□□□□ -0.75
HDAC4-216ENST00000544989 MAGEE2Q8TD90 523 aaPredicted RBP10.38□□□□□ -0.75
HDAC4-216ENST00000544989 LRR1Q96L50 414 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 TMUB1Q9BVT8 246 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 FKRPQ9H9S5 495 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 B3GAT2Q9NPZ5 323 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 SLC17A5Q9NRA2 495 aa10.38□□□□□ -0.75
HDAC4-216ENST00000544989 DSCAMO60469 2012 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms