RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PCBP4P57723 403 aaKnown RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 MLLT11Q13015 90 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ATAD3CQ5T2N8 411 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 HES3Q5TGS1 186 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 XKRXQ6PP77 449 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 OVCH1Q7RTY7 1134 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF584Q8IVC4 421 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 Q8N402 240 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF611Q8N823 705 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 DHRS1Q96LJ7 313 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 VSX1Q9NZR4 365 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 C5orf51A6NDU8 294 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 H3BMQ9 156 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 OR2T7P0C7T2 308 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 GTF2F2P13984 249 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 VAMP1P23763 118 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 HERV-K104P61576 105 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 CALHM3Q86XJ0 350 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 TEX19Q8NA77 164 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 OR2T27Q8NH04 317 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 NDNFQ8TB73 568 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 UCN3Q969E3 161 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 UBE2FQ969M7 185 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 BORCS8Q96FH0 119 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 COG8Q96MW5 612 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 SLC25A18Q9H1K4 315 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ASCC3Q8N3C0 2202 aaKnown RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 DRD5P21918 477 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 HTR1FP30939 366 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 STARP49675 285 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF554Q86TJ5 538 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 PM20D2Q8IYS1 436 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF511Q8NB15 262 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 RHOXF1Q8NHV9 184 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 ST8SIA1Q92185 356 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 DUS3LQ96G46 650 aaKnown RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 HCAR1Q9BXC0 346 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 OR11A1Q9GZK7 315 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 DEFB127Q9H1M4 99 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 MEPEQ9NQ76 525 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 C14orf119Q9NWQ9 140 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 SPEF1Q9Y4P9 236 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 WBP4O75554 376 aaKnown RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 PDGFBP01127 241 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 RAB3AP20336 220 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 MAKP20794 623 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 LCN1P31025 176 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 HTR5AP47898 357 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 PITPNBP48739 271 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 RHBDD2Q6NTF9 364 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 TTC9Q92623 222 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 SPACA9Q96E40 222 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 C14orf166Q9Y224 244 aaKnown RBP6.79□□□□□ -1.32
SYNE1-213ENST00000448038 BRWD1Q9NSI6 2320 aa6.79□□□□□ -1.32
SYNE1-213ENST00000448038 CCDC163A0A0D9SF12 145 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 A0A1W2PNR3 127 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 A0A1W2PQL4 384 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 IRF2P14316 349 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 IFNGR1P15260 489 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ECH1Q13011 328 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PRICKLE4Q2TBC4 344 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF628Q5EBL2 1059 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 BAIAP2L2Q6UXY1 529 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MSRB3Q8IXL7 192 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 TRMT10AQ8TBZ6 339 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CPT1CQ8TCG5 803 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 SGCDQ92629 289 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 NINJ1Q92982 152 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF442Q9H7R0 627 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 UCK1Q9HA47 277 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MYEF2Q9P2K5 600 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 TMEM184BQ9Y519 407 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PCDHGA6Q9Y5G7 932 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 NKX2-2O95096 273 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CFL1P23528 166 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ADARB1P78563 741 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PRKCDQ05655 676 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 SELENBP1Q13228 472 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CHRFAM7AQ494W8 412 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 FAM57BQ71RH2 274 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PLCZ1Q86YW0 608 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 OR5D14Q8NGL3 314 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 MUCL1Q96DR8 90 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF350Q9GZX5 532 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 WDR76Q9H967 626 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 OCIAD1Q9NX40 245 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 P4HTMQ9NXG6 502 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 FBXO9Q9UK97 447 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 THSD7BQ9C0I4 1608 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 TEX13DA0A0J9YY54 714 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PRAMEF4O60810 478 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 HTR3BO95264 441 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 CD1EP15812 388 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ABCD3P28288 659 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 RPL27P61353 136 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 SLC10A1Q14973 349 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 PRAMEF9Q5VWM5 478 aa6.78□□□□□ -1.32
SYNE1-213ENST00000448038 RPL22L1Q6P5R6 122 aaKnown RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 ZNF517Q6ZMY9 492 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-213ENST00000448038 D2HGDHQ8N465 521 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms