RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 EXOC3L2Q2M3D2 409 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF362Q5T0B9 420 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 HIST2H3PS2Q5TEC6 136 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 C12orf73Q69YU5 71 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 HIST2H3AQ71DI3 136 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 KRT74Q7RTS7 529 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ZBTB46Q86UZ6 589 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 GABRG1Q8N1C3 465 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 TPD52L3Q96J77 140 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF75AQ96N20 296 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 PRR14Q9BWN1 585 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 TXNIPQ9H3M7 391 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 MCTS1Q9ULC4 181 aaKnown RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ENO4A6NNW6 628 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 DEAF1O75398 565 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 AHSA1O95433 338 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 PGA4P0DJD7 388 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 PGA3P0DJD8 388 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 GNLYP22749 145 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 LOXP28300 417 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 IFNA8P32881 189 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ESRRGP62508 458 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 RFX4Q33E94 735 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 TMEM176BQ3YBM2 270 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ZBED5Q49AG3 693 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 PPP4R4Q6NUP7 873 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 HMGN2P46Q86SG4 172 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 WDFY1Q8IWB7 410 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 LNX2Q8N448 690 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 OR4K5Q8NGD3 323 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CCDC120Q96HB5 630 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 OR2M2Q96R28 347 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 EMC3Q9P0I2 261 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CDH10Q9Y6N8 788 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 DSPP15924 2871 aaKnown RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 AQP8O94778 261 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CCNB2O95067 398 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 PRB1P04280 392 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ALPLP05186 524 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 GRPRP30550 384 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 MSX2P35548 267 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 SLC25A1P53007 311 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 SH3BGRP55822 239 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 C1orf146Q5VVC0 180 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 GPR139Q6DWJ6 353 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CYP2R1Q6VVX0 501 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF845Q96IR2 970 aaPredicted RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 LDAHQ9H6V9 325 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 MOV10Q9HCE1 1003 aaKnown RBP6.22□□□□□ -1.41
LIMA1-202ENST00000394943 A8MXE2 369 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 J3QKU1 62 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 SULT2B1O00204 365 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 TNFRSF11BO00300 401 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 CXCL13O43927 109 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 PIP5K1CO60331 668 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 PPP3CBP16298 524 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 PSMB1P20618 241 aaKnown RBP6.21□□□□□ -1.41
LIMA1-202ENST00000394943 FASP25445 335 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 STARP49675 285 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 ST13P50502 369 aaKnown RBP6.21□□□□□ -1.41
LIMA1-202ENST00000394943 ASCL1P50553 236 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 PUDPQ08623 228 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 MRPL49Q13405 166 aaKnown RBP6.21□□□□□ -1.41
LIMA1-202ENST00000394943 TMED1Q13445 227 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 SLC25A47Q6Q0C1 308 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 DEF8Q6ZN54 512 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 DPPA2Q7Z7J5 298 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 TMCO5AQ8N6Q1 288 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 VANGL1Q8TAA9 524 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-202ENST00000394943 ZHX1-C8orf76Q96EF9 292 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 JSRP1Q96MG2 331 aaPredicted RBP6.21□□□□□ -1.41
LIMA1-202ENST00000394943 BDH2Q9BUT1 245 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 JAM3Q9BX67 310 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 ASPNQ9BXN1 380 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 HDHD5Q9BXW7 423 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 OR11A1Q9GZK7 315 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 OBP2BQ9NPH6 170 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 TESMINQ9Y4I5 508 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 UGT2A1Q9Y4X1 527 aa6.21□□□□□ -1.41
LIMA1-202ENST00000394943 UNC119BA6NIH7 251 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ZAR1LA6NP61 321 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 H0YC42 278 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 SLC16A6O15403 523 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 TRAPPC6AO75865 159 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 STAMBPO95630 424 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 CST1P01037 141 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 GASTP01350 101 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 TCN1P20061 433 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 SLC2A5P22732 501 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 DAPP51397 102 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 TPD52P55327 224 aaPredicted RBP6.21□□□□□ -1.42
LIMA1-202ENST00000394943 TMEM201Q5SNT2 666 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 SMARCD3Q6STE5 483 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 KLHL17Q6TDP4 642 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 Q6ZT83 130 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 ADCK1Q86TW2 530 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 P2RY8Q86VZ1 359 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 LIX1LQ8IVB5 337 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 PQLC1Q8N2U9 271 aa6.21□□□□□ -1.42
LIMA1-202ENST00000394943 OR5M1Q8NGP8 315 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms