RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 FOXD3Q9UJU5 478 aaPredicted RBP11.39□□□□□ -0.59
UPF1-208ENST00000600012 FBXL2Q9UKC9 423 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 DOCK7Q96N67 2140 aa11.39□□□□□ -0.59
UPF1-208ENST00000600012 IGLV3-32A0A0A0MS00 114 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ANKRD33BA6NCL7 494 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 A6NNC1 897 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 AHRRA9YTQ3 701 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 H0YJX3 145 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 SNPHO15079 494 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 GASTP01350 101 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ANXA8P13928 327 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 BMP5P22003 454 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 TCEA1P23193 301 aaKnown RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 GDF1P27539 372 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 TACR3P29371 465 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 CEACAM8P31997 349 aaPredicted RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 TIMP3P35625 211 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 MASP1P48740 699 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 SNTB1Q13884 538 aaKnown RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 ACSF3Q4G176 576 aaPredicted RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 C6orf52Q5T4I8 152 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 POMZP3Q6PJE2 187 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 MBOAT2Q6ZWT7 520 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ZER1Q7Z7L7 766 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ATG4DQ86TL0 474 aaPredicted RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 CDC20BQ86Y33 519 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 NRMQ8IXM6 262 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 FADS6Q8N9I5 356 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 WDSUB1Q8N9V3 476 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 OR4K17Q8NGC6 315 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 PIGXQ8TBF5 258 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 TMEM239Q8WW34 195 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 NTNG2Q96CW9 530 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 FAM46AQ96IP4 442 aaKnown RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 MBOAT4Q96T53 435 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 NPAS1Q99742 590 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 TOR3AQ9H497 397 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 RIBC2Q9H4K1 309 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ZNF629Q9UEG4 869 aaPredicted RBP11.38□□□□□ -0.59
UPF1-208ENST00000600012 PRDM4Q9UKN5 801 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 MGAT4BQ9UQ53 548 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 VDAC3Q9Y277 283 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 PLEKHA6Q9Y2H5 1048 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 C15orf41Q9Y2V0 281 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 ORC6Q9Y5N6 252 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 MED12Q93074 2177 aa11.38□□□□□ -0.59
UPF1-208ENST00000600012 KIAA1549Q9HCM3 1950 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 FLNAP21333 2647 aaKnown RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 A0A087WUJ7 227 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ELOA3DA6NLF2 546 aaPredicted RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 SHISA8B8ZZ34 492 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 TRIM3O75382 744 aaPredicted RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 ADAP00813 363 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 IL2RAP01589 272 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 PRKCAP17252 672 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 CCNA2P20248 432 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 SLC1A3P43003 542 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 GPR4P46093 362 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 RAD23AP54725 363 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 CRYZQ08257 329 aaKnown RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 FOXF1Q12946 379 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 SF3B4Q15427 424 aaKnown RBP eCLIP11.37□□□□□ -0.593e-7■■□□□ 14
UPF1-208ENST00000600012 TAF11Q15544 211 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ELOA3BQ3SY89 546 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 SWT1Q5T5J6 900 aaKnown RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 TTC33Q6PID6 262 aaPredicted RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 RRM2BQ7LG56 351 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 PLCZ1Q86YW0 608 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 PM20D2Q8IYS1 436 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 LINC00471Q8N535 108 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 NAXEQ8NCW5 288 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ELOA3Q8NG57 546 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 DNAJA4Q8WW22 397 aaPredicted RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 CYGBQ8WWM9 190 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 MBD6Q96DN6 1003 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 TMEM41AQ96HV5 264 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 MPP4Q96JB8 637 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 GPA33Q99795 319 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ZNF426Q9BUY5 554 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ADI1Q9BV57 179 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 DGCR6LQ9BY27 220 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ADAM19Q9H013 955 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ZNF556Q9HAH1 456 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 PAPOLBQ9NRJ5 636 aaKnown RBP11.37□□□□□ -0.59
UPF1-208ENST00000600012 MED17Q9NVC6 651 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 OSGIN1Q9UJX0 560 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 POFUT2Q9Y2G5 429 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 AP4B1Q9Y6B7 739 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ABCA2Q9BZC7 2435 aa11.37□□□□□ -0.59
UPF1-208ENST00000600012 ZNF469Q96JG9 3925 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 IGKV1D-42A0A075B6H8 117 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 SNX4O95219 450 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 IFI30P13284 250 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 FOSL1P15407 271 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 HOXB4P17483 251 aaPredicted RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 POLR2IP36954 125 aaKnown RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 RBM34P42696 430 aaKnown RBP11.36□□□□□ -0.59
UPF1-208ENST00000600012 OMPP47874 163 aa11.36□□□□□ -0.59
UPF1-208ENST00000600012 HSPA13P48723 471 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms