RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 UCHL1P09936 223 aa9□□□□□ -0.97
SS18-205ENST00000542420 CD8BP10966 210 aa9□□□□□ -0.97
SS18-205ENST00000542420 SPI1P17947 270 aa9□□□□□ -0.97
SS18-205ENST00000542420 MAP2K3P46734 347 aa9□□□□□ -0.97
SS18-205ENST00000542420 BLVRAP53004 296 aa9□□□□□ -0.97
SS18-205ENST00000542420 SIRPAP78324 504 aa9□□□□□ -0.97
SS18-205ENST00000542420 UBXN2BQ14CS0 331 aa9□□□□□ -0.97
SS18-205ENST00000542420 DEFB133Q30KQ1 61 aa9□□□□□ -0.97
SS18-205ENST00000542420 Q5BKY6 102 aa9□□□□□ -0.97
SS18-205ENST00000542420 ATAD3CQ5T2N8 411 aa9□□□□□ -0.97
SS18-205ENST00000542420 PYHIN1Q6K0P9 492 aa9□□□□□ -0.97
SS18-205ENST00000542420 SFXN4Q6P4A7 337 aa9□□□□□ -0.97
SS18-205ENST00000542420 ARL9Q6T311 187 aa9□□□□□ -0.97
SS18-205ENST00000542420 SLC16A9Q7RTY1 509 aa9□□□□□ -0.97
SS18-205ENST00000542420 RABEPKQ7Z6M1 372 aa9□□□□□ -0.97
SS18-205ENST00000542420 SHISA5Q8N114 240 aa9□□□□□ -0.97
SS18-205ENST00000542420 ARSGQ96EG1 525 aa9□□□□□ -0.97
SS18-205ENST00000542420 HSPA12BQ96MM6 686 aa9□□□□□ -0.97
SS18-205ENST00000542420 C7orf50Q9BRJ6 194 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 TIGARQ9NQ88 270 aa9□□□□□ -0.97
SS18-205ENST00000542420 COMMD3Q9UBI1 195 aa9□□□□□ -0.97
SS18-205ENST00000542420 COPS7AQ9UBW8 275 aa9□□□□□ -0.97
SS18-205ENST00000542420 SIRT4Q9Y6E7 314 aaPredicted RBP9□□□□□ -0.97
SS18-205ENST00000542420 CPAMD8Q8IZJ3 1885 aa9□□□□□ -0.97
SS18-205ENST00000542420 A0A0G2JK05 382 aa9□□□□□ -0.97
SS18-205ENST00000542420 SHISA3A0PJX4 238 aa9□□□□□ -0.97
SS18-205ENST00000542420 ZNF879B4DU55 563 aa9□□□□□ -0.97
SS18-205ENST00000542420 J3QLW9 94 aa9□□□□□ -0.97
SS18-205ENST00000542420 CTDSPLO15194 276 aa9□□□□□ -0.97
SS18-205ENST00000542420 SHOXO15266 292 aa9□□□□□ -0.97
SS18-205ENST00000542420 LRRTM2O43300 516 aa9□□□□□ -0.97
SS18-205ENST00000542420 HYAL3O43820 417 aaPredicted RBP9□□□□□ -0.97
SS18-205ENST00000542420 HPGDSO60760 199 aa9□□□□□ -0.97
SS18-205ENST00000542420 TFP02787 698 aa9□□□□□ -0.97
SS18-205ENST00000542420 ZNF19P17023 458 aa9□□□□□ -0.97
SS18-205ENST00000542420 PGCP20142 388 aa9□□□□□ -0.97
SS18-205ENST00000542420 THBS2P35442 1172 aa9□□□□□ -0.97
SS18-205ENST00000542420 RPL4P36578 427 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 SCAND1P57086 179 aa9□□□□□ -0.97
SS18-205ENST00000542420 PITPNAQ00169 270 aa9□□□□□ -0.97
SS18-205ENST00000542420 ERV3-1Q14264 604 aa9□□□□□ -0.97
SS18-205ENST00000542420 ACSM3Q53FZ2 586 aa9□□□□□ -0.97
SS18-205ENST00000542420 ZMAT1Q5H9K5 638 aa9□□□□□ -0.97
SS18-205ENST00000542420 RSBN1Q5VWQ0 802 aaPredicted RBP9□□□□□ -0.97
SS18-205ENST00000542420 HLA-DQA1Q5Y7H0 255 aa9□□□□□ -0.97
SS18-205ENST00000542420 SLC29A4Q7RTT9 530 aa9□□□□□ -0.97
SS18-205ENST00000542420 JAZF1Q86VZ6 243 aa9□□□□□ -0.97
SS18-205ENST00000542420 SLC35F3Q8IY50 421 aa9□□□□□ -0.97
SS18-205ENST00000542420 Q8N402 240 aa9□□□□□ -0.97
SS18-205ENST00000542420 OR1N1Q8NGS0 311 aa9□□□□□ -0.97
SS18-205ENST00000542420 OR4K13Q8NH42 304 aa9□□□□□ -0.97
SS18-205ENST00000542420 PHOSPHO1Q8TCT1 267 aa9□□□□□ -0.97
SS18-205ENST00000542420 DCLRE1CQ96SD1 692 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 NXF5Q9H1B4 397 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 CAPN10Q9HC96 672 aa9□□□□□ -0.97
SS18-205ENST00000542420 NANSQ9NR45 359 aa9□□□□□ -0.97
SS18-205ENST00000542420 ZMAT5Q9UDW3 170 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 PPIEQ9UNP9 301 aaKnown RBP9□□□□□ -0.97
SS18-205ENST00000542420 BOLA1Q9Y3E2 137 aa9□□□□□ -0.97
SS18-205ENST00000542420 BCAT2O15382 392 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 CDC123O75794 336 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 RAB3BP20337 219 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 GDI2P50395 445 aaKnown RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 SLC16A1P53985 500 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 SUMO3P55854 103 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 OR12D2P58182 307 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 BTG1P62324 171 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 EFR3AQ14156 821 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 QPRTQ15274 297 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TAB1Q15750 504 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 HSD17B12Q53GQ0 312 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 YIF1BQ5BJH7 314 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ZNF684Q5T5D7 378 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 LINC01590Q5TEZ4 76 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TIGD3Q6B0B8 471 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TTLL10Q6ZVT0 673 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 CEACAM19Q7Z692 300 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 CELF2-AS1Q8N7Q2 184 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 SDR9C7Q8NEX9 313 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 OR1L3Q8NH93 324 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ENKURQ8TC29 256 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 STK35Q8TDR2 534 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 PELI1Q96FA3 418 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 RNF170Q96K19 258 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 FRMD6Q96NE9 622 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 DUSP23Q9BVJ7 150 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 C11orf54Q9H0W9 315 aaPredicted RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 RNF121Q9H920 327 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 PNO1Q9NRX1 252 aaKnown RBP8.99□□□□□ -0.97
SS18-205ENST00000542420 PLSCR3Q9NRY6 295 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 NCDNQ9UBB6 729 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 ZNF221Q9UK13 617 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TMEM14AQ9Y6G1 99 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 TRAV36DV7A0A075B6V5 113 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 MEIOCA2RUB1 952 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 PLA2G10O15496 165 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 YKT6O15498 198 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 SLC43A1O75387 559 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 CCNKO75909 580 aa8.99□□□□□ -0.97
SS18-205ENST00000542420 IGHMP01871 453 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms