RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 TMEM129A0AVI4 362 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 TMEM229AB2RXF0 380 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 FTCDNL1E5RQL4 147 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 LYNX1G3V0Z9 82 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 SDHDO14521 159 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 NPIPB7O75200 414 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 STAMBPO95630 424 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 DBIP07108 87 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 LYNX1P0DP58 116 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 ETFAP13804 333 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 LBPP18428 481 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 CXCR1P25024 350 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 THBS4P35443 961 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 SLC1A6P48664 564 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 HOXC5Q00444 222 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 EGR4Q05215 589 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 IFFO1Q0D2I5 559 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 EFNB3Q15768 340 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 IQCCQ4KMZ1 466 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 NIPAL3Q6P499 406 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 ZNF621Q6ZSS3 439 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 SERPINA11Q86U17 422 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 WDFY1Q8IWB7 410 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 SVOPLQ8N434 492 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 AENQ8WTP8 325 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 PANX1Q96RD7 426 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 PTDSS2Q9BVG9 487 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 AIG1Q9NVV5 245 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 TMEM45AQ9NWC5 275 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 B3GAT1Q9P2W7 334 aa13.4□□□□□ -0.26
CLSTN3-213ENST00000541953 ARPC4-TTLL3A0A0A6YYG9 625 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 B9A039 149 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF587BE7ETH6 402 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 SEC14L2O76054 403 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 PGRP06401 933 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 MYZAPP0CAP1 466 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 NR2F1P10589 423 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 PPOXP50336 477 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 RPL14P50914 215 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 IDH3GP51553 393 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 CLNS1AP54105 237 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 C1orf140Q5VVS0 124 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 PRAMEF8Q5VWM4 474 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 PRAMEF7Q5VXH5 474 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 CDK20Q8IZL9 346 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 VPS37AQ8NEZ2 397 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 VPS33AQ96AX1 596 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 MTHFD2LQ9H903 347 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 MEAF6Q9HAF1 191 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 NOX3Q9HBY0 568 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 HAO1Q9UJM8 370 aa13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF443Q9Y2A4 671 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-213ENST00000541953 hCG_2039718K7EN88 272 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 KRT33AO76009 404 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ZNF432O94892 652 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 IGKV3-15P01624 115 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 CRYAAP02489 173 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 BCHEP06276 602 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 PNMTP11086 282 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ITGA2P17301 1181 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ARF1P84077 181 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ROR2Q01974 943 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 DPY19L1Q2PZI1 675 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 PHYHD1Q5SRE7 291 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 TMEM225Q6GV28 225 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 OGFOD2Q6N063 350 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 COMTD1Q86VU5 262 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 OR52P1PQ8NH57 321 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 OR52E6Q96RD3 313 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 SNX18Q96RF0 628 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 DOK1Q99704 481 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ROPN1BQ9BZX4 212 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 WDR55Q9H6Y2 383 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 ROPN1Q9HAT0 212 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 OBP2BQ9NPH6 170 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 GPR45Q9Y5Y3 372 aa13.38□□□□□ -0.27
CLSTN3-213ENST00000541953 MEGF8Q7Z7M0 2845 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 IGHV2OR16-5A0A0B4J2B6 119 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 SH3PXD2BA1X283 911 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 A8MVM7 634 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 PDE5AO76074 875 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 TACSTD2P09758 323 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 NUDT7P0C024 238 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 TFPTP0C1Z6 253 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 DAOP14920 347 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 GIFP27352 417 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 MAP2K6P52564 334 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 CLDN17P56750 224 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 UBE2NP61088 152 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 BST1Q10588 318 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 CCNIQ14094 377 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 GSTA3Q16772 222 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 ATG16L1Q676U5 607 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 WBP2NLQ6ICG8 309 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 CARM1Q86X55 608 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 PEX5LQ8IYB4 626 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 SLC38A5Q8WUX1 472 aa13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLSTN3-213ENST00000541953 KTI12Q96EK9 354 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms