RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 SPIN1Q9Y657 262 aaPredicted RBP6.67□□□□□ -1.34
CD44-228ENST00000528455 U3KQV3 271 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 NCKAP5O14513 1909 aa6.67□□□□□ -1.34
CD44-228ENST00000528455 FLNCQ14315 2725 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 MPDZO75970 2070 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 A0A0G2JMM0 328 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 A0A1W2PPB8 328 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 A0A1W2PRS3 328 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 LRRC3CA6NJW4 275 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 GJE1A6NN92 205 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 C17orf51A8MQB3 221 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 KIR3DP1A8MWS1 328 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 G3V3Y1 287 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 K7EM74 188 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ACOT7O00154 380 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 GMFGO60234 142 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 OR10H3O60404 316 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 HCN1O60741 890 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 NPIPB7O75200 414 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 TRAPPC6AO75865 159 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ACTL6AO96019 429 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 GASTP01350 101 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 CRYABP02511 175 aaKnown RBP6.66□□□□□ -1.34
CD44-228ENST00000528455 SCG5P05408 212 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ZNF23P17027 643 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 PRKACGP22612 351 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ELK4P28324 431 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 HOXC12P31275 282 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 B3GALT5-AS1P59052 145 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 PLGLB1Q02325 96 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 MFSD13AQ14CX5 517 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 TOMM20Q15388 145 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 SEC23BQ15437 767 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 EXOC3L2Q2M3D2 409 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ANKDD1AQ495B1 522 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 KRTCAP3Q53RY4 240 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 NHSL2Q5HYW2 709 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 FGD3Q5JSP0 725 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ZER1Q7Z7L7 766 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 STK32CQ86UX6 486 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 TMEM251Q8N6I4 163 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ICA1LQ8NDH6 482 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 FAM83FQ8NEG4 500 aaPredicted RBP6.66□□□□□ -1.34
CD44-228ENST00000528455 OR4K5Q8NGD3 323 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 OR14L1PQ8NHC6 308 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 GNPDA2Q8TDQ7 276 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 SLC25A43Q8WUT9 341 aaPredicted RBP6.66□□□□□ -1.34
CD44-228ENST00000528455 PNPLA2Q96AD5 504 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 SDCCAG3Q96C92 435 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 DDIT4LQ96D03 193 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 FEVQ99581 238 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 RBM4BQ9BQ04 359 aaKnown RBP6.66□□□□□ -1.34
CD44-228ENST00000528455 KLHDC3Q9BQ90 382 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 RBM4Q9BWF3 364 aaKnown RBP6.66□□□□□ -1.34
CD44-228ENST00000528455 DGCR6LQ9BY27 220 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 COQ10BQ9H8M1 238 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ZDHHC11Q9H8X9 412 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ZNF556Q9HAH1 456 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 CTPS2Q9NRF8 586 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 VNN3Q9NY84 501 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 USE1Q9NZ43 259 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 CHRNA9Q9UGM1 479 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 DKKL1Q9UK85 242 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 OAZ3Q9UMX2 235 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 VDAC3Q9Y277 283 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 TMEM5Q9Y2B1 443 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 ZNF337Q9Y3M9 751 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 CSAG2Q9Y5P2 127 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 AP4B1Q9Y6B7 739 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 COL12A1Q99715 3063 aa6.66□□□□□ -1.34
CD44-228ENST00000528455 NBASA2RRP1 2371 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 TRAV36DV7A0A075B6V5 113 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 A0A1B0GVC2 190 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 OR2M5A3KFT3 312 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PTP4A3O75365 173 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 HPRP00739 348 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 MT-ATP6P00846 226 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 IGHG3P01860 377 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 ALPLP05186 524 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PEPDP12955 493 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 CPN1P15169 458 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 GSTM3P21266 225 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 CBLP22681 906 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 GDF1P27539 372 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 VHLP40337 213 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 MAGEA5P43359 124 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 OMPP47874 163 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 GSSP48637 474 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PTDSS1P48651 473 aaKnown RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 SLC9A3P48764 834 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 DAPP51397 102 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 ALDH3A2P51648 485 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 IST1P53990 364 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 GFRA1P56159 465 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PPP2R2BQ00005 443 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 EGR4Q05215 589 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 PPP1R8Q12972 351 aaKnown RBP6.65□□□□□ -1.34
CD44-228ENST00000528455 TSPAN31Q12999 210 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 SELENBP1Q13228 472 aa6.65□□□□□ -1.34
CD44-228ENST00000528455 DAG1Q14118 895 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms