RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TMED5Q9Y3A6 229 aa3.16□□□□□ -1.9
CD44-223ENST00000526553 CLSPNQ9HAW4 1339 aa3.16□□□□□ -1.9
CD44-223ENST00000526553 OBSCNQ5VST9 7968 aa3.15□□□□□ -1.9
CD44-223ENST00000526553 SMIM28A0A1B0GU29 152 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 HEATR9A2RTY3 570 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 TMEM110-MUSTN1A8MSY1 372 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 IDSB3KWA1 339 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 HAS3O00219 553 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 FOXE1O00358 373 aaPredicted RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 IGHV3-23P01764 117 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 NCK1P16333 377 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 PSMB1P20618 241 aaKnown RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 HOXD10P28358 340 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 CRYBB2P43320 205 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 STARP49675 285 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 HLCSP50747 726 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 PRMT2P55345 433 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 RPS8P62241 208 aaKnown RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 BST2Q10589 180 aaKnown RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 RCN1Q15293 331 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 PRR4Q16378 134 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 ATL3Q6DD88 541 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 DHDDSQ86SQ9 333 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 CCDC65Q8IXS2 484 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 ARNTL2Q8WYA1 636 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 CXorf40BQ96DE9 158 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 MS4A14Q96JA4 679 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 TECTBQ96PL2 329 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 RABL2AQ9UBK7 228 aaPredicted RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 TMCO1Q9UM00 188 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 PEX16Q9Y5Y5 336 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 PTPRTO14522 1441 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 MED1Q15648 1581 aaPredicted RBP3.15□□□□□ -1.91
CD44-223ENST00000526553 MYO5CQ9NQX4 1742 aa3.15□□□□□ -1.91
CD44-223ENST00000526553 FHOD3Q2V2M9 1422 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 SCAPERQ9BY12 1400 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 A0A1W2PPE3 182 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 BTBD17A6NE02 478 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 LATO43561 262 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 UPK3AO75631 287 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 ATP5LO75964 103 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 KRT14P02533 472 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 CRYGBP07316 175 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 CD1EP15812 388 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 HMGB2P26583 209 aaKnown RBP3.14□□□□□ -1.91
CD44-223ENST00000526553 IL12AP29459 219 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 GCKP35557 465 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 LEPP41159 167 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 KRTAP10-8P60410 259 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 SRSF5Q13243 272 aaKnown RBP3.14□□□□□ -1.91
CD44-223ENST00000526553 CUL1Q13616 776 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 HSP90AB3PQ58FF7 597 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 CARD17Q5XLA6 110 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 SCARA5Q6ZMJ2 495 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 MOB1BQ7L9L4 216 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 NRMQ8IXM6 262 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 OR2L13Q8N349 312 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 ALLCQ8N6M5 410 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 SPATA4Q8NEY3 305 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 OR2A12Q8NGT7 310 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 KCNG3Q8TAE7 436 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 C16orf74Q96GX8 76 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 TIMD4Q96H15 378 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 IMMP1LQ96LU5 166 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 NUP58Q9BVL2 599 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 SRXN1Q9BYN0 137 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 NMUR2Q9GZQ4 415 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 REEP4Q9H6H4 257 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 ISG20L2Q9H9L3 353 aaKnown RBP3.14□□□□□ -1.91
CD44-223ENST00000526553 ZFP14Q9HCL3 533 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 NT5MQ9NPB1 228 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 OR1A1Q9P1Q5 309 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 DCDC2Q9UHG0 476 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 CAMSAP1Q5T5Y3 1602 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 LTBP4Q8N2S1 1624 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 LRRK1Q38SD2 2015 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 ZMYM4Q5VZL5 1548 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.14□□□□□ -1.91
CD44-223ENST00000526553 ARHGEF12Q9NZN5 1544 aa3.14□□□□□ -1.91
CD44-223ENST00000526553 RAI1Q7Z5J4 1906 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 C9orf84Q5VXU9 1444 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 A0A075B6Q4 140 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 IQANK1A0A1B0GTG1 560 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ZNF705EA8MWA4 302 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 A8MXQ7 604 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 RGS16O15492 202 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 KLHL41O60662 606 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 TOM1O60784 492 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ACTL6AO96019 429 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 IGLV1-47P01700 117 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ATP1B2P14415 290 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 ETS2P15036 469 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 GALP22466 123 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 CD1CP29017 333 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 CALCRP30988 508 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 CASP14P31944 242 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 RFC4P35249 363 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 QARSP47897 775 aaKnown RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 PKNOX1P55347 436 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 CDK16Q00536 496 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms