RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 ETV4P43268 484 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 RPL14P50914 215 aaKnown RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 FABP6P51161 128 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ZNF83P51522 516 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 POLR2HP52434 150 aaKnown RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 ABCE1P61221 599 aaKnown RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 KCNJ10P78508 379 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CHI3L2Q15782 390 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 MAPK14Q16539 360 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CHRFAM7AQ494W8 412 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 SAXO2Q658L1 398 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 TYW3Q6IPR3 259 aaKnown RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 HMBOX1Q6NT76 420 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ZNF544Q6NX49 715 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 EMBQ6PCB8 327 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CASP12Q6UXS9 341 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 FRRS1Q6ZNA5 592 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 DNM1P46Q6ZS02 220 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ANKRD46Q86W74 232 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 HIPK1Q86Z02 1210 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ZNF440Q8IYI8 595 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CLEC4FQ8N1N0 589 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 MUC15Q8N387 334 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 C17orf78Q8N4C9 275 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ZNF781Q8N8C0 355 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 C1orf162Q8NEQ5 155 aaPredicted RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 OR52N5Q8NH56 324 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 RAB8BQ92930 207 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 MUS81Q96NY9 551 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 TRNT1Q96Q11 434 aaKnown RBP6.31□□□□□ -1.4
USP46-208ENST00000512656 JMJD8Q96S16 334 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 SLC35A5Q9BS91 424 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 TMEM109Q9BVC6 243 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CACNG6Q9BXT2 260 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CTPS2Q9NRF8 586 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 NPAP1Q9NZP6 1156 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 TMEM181Q9P2C4 612 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 UPB1Q9UBR1 384 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 ADAM21Q9UKJ8 722 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 B3GALT5Q9Y2C3 310 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 AMDHD2Q9Y303 409 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 SLC25A15Q9Y619 301 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 PMF1-BGLAPU3KQ54 211 aa6.31□□□□□ -1.4
USP46-208ENST00000512656 CHD3Q12873 2000 aaKnown RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 ANK3Q12955 4377 aaKnown RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 TMED7-TICAM2A0A0A6YYA0 188 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 WDR91A4D1P6 747 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CFAP73A6NFT4 308 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 AGAP5A6NIR3 686 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 RNF212BA8MTL3 300 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 E7EQL1 145 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 E9PBE3 544 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 H7C417 338 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 M0R1B8 84 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 FAAHO00519 579 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 TM9SF1O15321 606 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 RGS16O15492 202 aaPredicted RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 SCN2BO60939 215 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 NDUFS7O75251 213 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 IGHV3-9P01782 118 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 GPIP06744 558 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CSF3P09919 207 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 NR2F1P10589 423 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CREB1P16220 341 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 SLC25A16P16260 332 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 IL7RP16871 459 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 ZNF16P17020 682 aaPredicted RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 LBPP18428 481 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 PAX7P23759 505 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 EDNRAP25101 427 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 SLC1A3P43003 542 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 SLC1A6P48664 564 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 IDH2P48735 452 aaKnown RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 CASP9P55211 416 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 VSNL1P62760 191 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 H3F3AP84243 136 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CASP8Q14790 479 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 GABRA6Q16445 453 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 GSTA3Q16772 222 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 ZSWIM7Q19AV6 140 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 KRT71Q3SY84 523 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 FAM174BQ3ZCQ3 159 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 SPANXN4Q5MJ08 99 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 PAQR6Q6TCH4 344 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 KLHL24Q6TFL4 600 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 LRRC74BQ6ZQY2 392 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 OLIG3Q7RTU3 272 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 ABHD12BQ7Z5M8 362 aaPredicted RBP6.3□□□□□ -1.4
USP46-208ENST00000512656 ADGRG3Q86Y34 549 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CCDC103Q8IW40 242 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 OR10H5Q8NGA6 315 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 WDR60Q8WVS4 1066 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 TMEM158Q8WZ71 300 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 ARL5BQ96KC2 179 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 PKNOX2Q96KN3 472 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 PPP1R36Q96LQ0 422 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 CCDC115Q96NT0 180 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 ZBTB18Q99592 522 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 INPP5KQ9BT40 448 aa6.3□□□□□ -1.4
USP46-208ENST00000512656 KRTAP9-3Q9BYQ3 159 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms