RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 REEP6Q96HR9 211 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC46A1Q96NT5 459 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SERINC2Q96SA4 455 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 GSTO2Q9H4Y5 243 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 RNF19AQ9NV58 838 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 URGCP-MRPS24S4R325 110 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 ATRNL1Q5VV63 1379 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 TMEM269A0A1B0GVZ9 245 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 OR5H15A6NDH6 313 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 OR5H1A6NKK0 313 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 TCAPO15273 167 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CLDN1O95832 211 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 ADH4P08319 380 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 FBP1P09467 338 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 TESK1Q15569 626 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 RPL7L1Q6DKI1 246 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 ADGRE4PQ86SQ3 457 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CATSPERDQ86XM0 798 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CLECL1Q8IZS7 167 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 UBAC2Q8NBM4 344 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CLEC4CQ8WTT0 213 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 KHSRPQ92945 711 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 MRGPRX2Q96LB1 330 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 DHRS4Q9BTZ2 278 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 NSG2Q9Y328 171 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 PLIN4Q96Q06 1357 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 OR2A25A4D2G3 310 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SCO2O43819 266 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 G0S2P27469 103 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 APLNRP35414 380 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 ACVRL1P37023 503 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 PREPP48147 710 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC11A1P49279 550 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 ERVPABLB-1P60509 514 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 UBE2IP63279 158 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 EXOSC2Q13868 293 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 NHSL2Q5HYW2 709 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC35D3Q5M8T2 416 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 Q6ZRG5 221 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 BPHLQ86WA6 291 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC39A11Q8N1S5 342 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CBARPQ8N350 705 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SH3RF2Q8TEC5 729 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 MMABQ96EY8 250 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC2A8Q9NY64 477 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 AK3Q9UIJ7 227 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC9B1P1A6NJY1 282 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 GLSO94925 669 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 KLF8O95600 359 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 HBQ1P09105 142 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 IVDP26440 423 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 EOGTQ5NDL2 527 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 OR4A16Q8NH70 328 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC25A46Q96AG3 418 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 KIRREL1Q96J84 757 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 LIN7CQ9NUP9 197 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 NECAP2Q9NVZ3 263 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 AJAP1Q9UKB5 411 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 BOLA1Q9Y3E2 137 aa10.48□□□□□ -0.73
LIMCH1-208ENST00000508501 CEP170BQ9Y4F5 1589 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KIR2DS1A0A191URI9 304 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZNF26P17031 533 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 NTF3P20783 257 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 HTR1FP30939 366 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KIR2DS4P43632 304 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CLDN20P56880 219 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 OR2B8PP59922 312 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 FABP9Q0Z7S8 132 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KIR2DS1Q14954 304 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC14A2Q15849 920 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 FXNQ16595 210 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 RPUSD3Q6P087 351 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 DHRS11Q6UWP2 260 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CREB3L4Q8TEY5 395 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ST8SIA2Q92186 375 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 PRR11Q96HE9 360 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 TMEM43Q9BTV4 400 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KCNK12Q9HB15 430 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 B3GALT5Q9Y2C3 310 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 PCDHAC2Q9Y5I4 1007 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 PRAMEF27A3QJZ7 478 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GLOD5A6NK44 160 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZFP92A6NM28 416 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CPNE6O95741 557 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 OR10J4P0C629 311 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 CSF2RAP15509 400 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 NKX2-1P43699 371 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 KCNJ3P48549 501 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZNF154Q13106 437 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 GRM7Q14831 915 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 TRIM61Q5EBN2 209 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 PRAMEF9Q5VWM5 478 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 NCR3LG1Q68D85 454 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SUSD1Q6UWL2 747 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 USP50Q70EL3 339 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ADGRG3Q86Y34 549 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 PTRH1Q86Y79 214 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 SLC39A7Q92504 469 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 ZNF516Q92618 1163 aa10.47□□□□□ -0.73
LIMCH1-208ENST00000508501 AMDHD1Q96NU7 426 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms