RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 F11P03951 625 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CTSAP10619 480 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SCGB1A1P11684 91 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CBR1P16152 277 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 UGT2B7P16662 529 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SLC6A11P48066 632 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 EMP3P54852 163 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 RNLSQ5VYX0 342 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SYT13Q7L8C5 426 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 COMMD7Q86VX2 200 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CDRT4Q8N9R6 151 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CHFRQ96EP1 664 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 COQ10AQ96MF6 247 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MMP28Q9H239 520 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 H3BNC9 293 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SNRNP70P08621 437 aaKnown RBP12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SCML1Q9UN30 329 aa12.36□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 LOC102723971A0A1B0GUV8 181 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 POM121CA8CG34 1229 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MCRIP1C9JLW8 97 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HS3ST1O14792 307 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HPGDSO60760 199 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 PIGRP01833 764 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 BMI1P35226 326 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 RRADP55042 308 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 TAS2R30P59541 319 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 PCBD1P61457 104 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SLC46A3Q7Z3Q1 461 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 NPWQ8N729 165 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 OR5M1Q8NGP8 315 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 DCLRE1CQ96SD1 692 aaKnown RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 NMNAT1Q9HAN9 279 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MEGF11A6BM72 1044 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ANKRD61A6NGH8 418 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GPR39O43194 453 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GPR18Q14330 331 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CNIH2Q6PI25 160 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CYP4V2Q6ZWL3 525 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MIB2Q96AX9 1013 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GAREM1Q9H706 876 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ATRNO75882 1429 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 A0A0D9SG52 128 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GIFP27352 417 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MS4A15Q8N5U1 240 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SUMF1Q8NBK3 374 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 METTL9Q9H1A3 318 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 EGLN3Q9H6Z9 239 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 EEDO75530 441 aaKnown RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 RNASE1P07998 156 aaKnown RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 TRAPPC2P0DI81 140 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 TRAPPC2BP0DI82 140 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 BCKDHBP21953 392 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ZNF181Q2M3W8 571 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 B3GLCTQ6Y288 498 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 VRK2Q86Y07 508 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MED20Q9H944 212 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 POPDC3Q9HBV1 291 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MT-ND4P03905 459 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 IDUAP35475 653 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 LYPD8Q6UX82 237 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HSD17B11Q8NBQ5 300 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 EDAQ92838 391 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 WDR83Q9BRX9 315 aaKnown RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 NMNAT2Q9BZQ4 307 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ELOVL3Q9HB03 270 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CCM2LQ9NUG4 571 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SRPK3Q9UPE1 567 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GLCEO94923 617 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HLA-AP01891 365 aaKnown RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SSR4P51571 173 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ATP1B3P54709 279 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 PNCKQ6P2M8 343 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SIRT6Q8N6T7 355 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SLC35A3Q9Y2D2 325 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 A3GALT2U3KPV4 340 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 TMX2-CTNND1H3BSU7 103 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 SDHDO14521 159 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HSD17B6O14756 317 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MSTNO14793 375 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ICAM2P13598 275 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HTR1EP28566 365 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HOXD12P35452 270 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HMGCLP35914 325 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CARD18P57730 90 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 GPR85P60893 370 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 OR5I1Q13606 314 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ZNF322Q6U7Q0 402 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 BAGE3Q86Y29 109 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 BAGE2Q86Y30 109 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ITPKCQ96DU7 683 aa12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ZNF764Q96H86 408 aaPredicted RBP12.35□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CAMTA1Q9Y6Y1 1673 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 DDAH2O95865 285 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HMGN2P05204 90 aaKnown RBP12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 HSD11B1LQ7Z5J1 315 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 UFSP2Q9NUQ7 469 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 EBF1Q9UH73 591 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 CICQ96RK0 1608 aaPredicted RBP12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 ONECUT2O95948 504 aa12.34□□□□□ -0.43
NPHP3-ACAD11-201ENST00000471702 MNX1P50219 401 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms