RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 PNLIPP16233 465 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 ENDOUP21128 410 aaKnown RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 MST1P26927 711 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 DEFA1P59665 94 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 DEFA3P59666 94 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 KIF26BQ2KJY2 2108 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 IDNKQ5T6J7 187 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 FAM27D1Q5T7N8 215 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 DDI2Q5TDH0 399 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 LINC00299Q6ZSB3 139 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 SSX6Q7RTT6 188 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 OVCH1Q7RTY7 1134 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 KISS1RQ969F8 398 aaPredicted RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 ULBP3Q9BZM4 244 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 SEMA5BQ9P283 1151 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 GTF2A1LQ9UNN4 478 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 EP300Q09472 2414 aaPredicted RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 TMED7-TICAM2A0A0A6YYA0 188 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 CCDC182A6NF36 153 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 AHSA1O95433 338 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 IL1AP01583 271 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 STEAP3Q658P3 488 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 CPEB2Q7Z5Q1 589 aaKnown RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 CEACAM19Q7Z692 300 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 DTX3Q8N9I9 347 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 OR5J2Q8NH18 312 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 KCNN2Q9H2S1 579 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 C19orf25Q9UFG5 118 aaPredicted RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 CLEC4AQ9UMR7 237 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 TMED7Q9Y3B3 224 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 FABP12A6NFH5 140 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 H3BML4 177 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 APOA1P02647 267 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 SPI1P17947 270 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 EDNRAP25101 427 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 RPS27P42677 84 aaKnown RBP12.43□□□□□ -0.42
CLK3-203ENST00000454830 ACTC1P68032 377 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 ACTA1P68133 377 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 PYDC2Q56P42 97 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 KANSL1Q7Z3B3 1105 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 AP3S1Q92572 193 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 TMCO6Q96DC7 493 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 SLC19A3Q9BZV2 496 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 ARRDC1-AS1Q9H2J1 176 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 TMEM185BQ9H7F4 350 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 A3GALT2U3KPV4 340 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 CACNA1HO95180 2353 aa12.43□□□□□ -0.42
CLK3-203ENST00000454830 PCNX3Q9H6A9 2034 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 OR6C76A6NM76 312 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 YKT6O15498 198 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 HOXA6P31267 233 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 CDKN2AP42771 156 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 GBX2P52951 348 aaPredicted RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 EGR4Q05215 589 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 KRR1Q13601 381 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 ARMC4Q5T2S8 1044 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 FNDC7Q5VTL7 733 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 TUBA3EQ6PEY2 450 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 GPALPP1Q8IXQ4 340 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 UBE2J2Q8N2K1 259 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 C7orf57Q8NEG2 295 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 OR13C5Q8NGS8 318 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SLC25A46Q96AG3 418 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ALG12Q9BV10 488 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 TRDV1A0A1B0GX56 115 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SHISA8B8ZZ34 492 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 C9J4A7 227 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 D6RAR5 112 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 RGS9O75916 674 aaPredicted RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 ZNF28P17035 718 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ADH7P40394 386 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 P2RX1P51575 399 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 LTBQ06643 244 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 POU4F2Q12837 409 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 FAM71CQ8NEG0 241 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 OR6N2Q8NGY6 317 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 CEP76Q8TAP6 659 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 C5orf34Q96MH7 638 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 EXOSC3Q9NQT5 275 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 PCDHGB7Q9Y5F8 929 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 EIF4E2O60573 245 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 OR2J2O76002 312 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 RENP00797 406 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 MYL9P24844 172 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ZMAT1Q5H9K5 638 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SLC6A19Q695T7 634 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SPATC1Q76KD6 591 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 MAMDC2Q7Z304 686 aaPredicted RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 OR5L2Q8NGL0 311 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ZNRF4Q8WWF5 429 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ADAD1Q96M93 576 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 TMEM43Q9BTV4 400 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SYT4Q9H2B2 425 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 ISYNA1Q9NPH2 558 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 NRIP3Q9NQ35 241 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 PRMT8Q9NR22 394 aaPredicted RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 PPP4R1LQ9P1A2 415 aa12.42□□□□□ -0.42
CLK3-203ENST00000454830 SF3B6Q9Y3B4 125 aaKnown RBP12.42□□□□□ -0.42
CLK3-203ENST00000454830 ZNF354AO60765 605 aaPredicted RBP12.41□□□□□ -0.42
CLK3-203ENST00000454830 TFP02787 698 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms