RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FAM74A1Q5RGS3 127 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 TMEM69Q5SWH9 247 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 ZNF425Q6IV72 752 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 ADGRG3Q86Y34 549 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 OR8S1Q8NH09 359 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 TRIM43Q96BQ3 446 aaPredicted RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 ABRACLQ9P1F3 81 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 SUSD5O60279 629 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 DOK2O60496 412 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 MNX1P50219 401 aaPredicted RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 EFNB2P52799 333 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 GBX2P52951 348 aaPredicted RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 UBE2NLQ5JXB2 153 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 MARVELD3Q96A59 401 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 FKBP7Q9Y680 259 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 POM121BA6NF01 834 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 MCRIP1C9JLW8 97 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 OGG1O15527 345 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 SPDEFO95238 335 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 NAGAP17050 411 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 NFYAP23511 347 aaPredicted RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 PPP2CBP62714 309 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 PPP2CAP67775 309 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 GRM7Q14831 915 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 ARSKQ6UWY0 536 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 VITQ6UXI7 678 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 ZSCAN2Q7Z7L9 614 aaPredicted RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 MYEF2Q9P2K5 600 aaKnown RBP19.23■□□□□ 0.67
CTCF-202ENST00000401394 GPR160Q9UJ42 338 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 SLC27A6Q9Y2P4 619 aa19.23■□□□□ 0.67
CTCF-202ENST00000401394 PRMT2P55345 433 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 HLXQ14774 488 aaPredicted RBP19.22■□□□□ 0.67
CTCF-202ENST00000401394 GLB1L2Q8IW92 636 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 THEM6Q8WUY1 208 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 RNF166Q96A37 237 aaPredicted RBP19.22■□□□□ 0.67
CTCF-202ENST00000401394 KLHDC3Q9BQ90 382 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 ARL6Q9H0F7 186 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 KRCC1Q9NPI7 259 aaPredicted RBP19.22■□□□□ 0.67
CTCF-202ENST00000401394 COPZ2Q9P299 210 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 DAPP1Q9UN19 280 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 STON1Q9Y6Q2 735 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 CNTRLQ7Z7A1 2325 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 TRAV1-2A0A0B4J238 106 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 MFSD2BA6NFX1 497 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 TVP23AA6NH52 213 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 KRT33AO76009 404 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 ZNF35P13682 527 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 KIRREL2Q6UWL6 708 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 CNN2Q99439 309 aaKnown RBP19.22■□□□□ 0.67
CTCF-202ENST00000401394 LYARQ9NX58 379 aaKnown RBP19.22■□□□□ 0.67
CTCF-202ENST00000401394 FOXJ3Q9UPW0 622 aa19.22■□□□□ 0.67
CTCF-202ENST00000401394 DCTN6O00399 190 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 CMPK1P30085 196 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 PPP1CAP62136 330 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 CBFBQ13951 182 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 PWWP2BQ6NUJ5 590 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 GLDNQ6ZMI3 551 aaPredicted RBP19.21■□□□□ 0.67
CTCF-202ENST00000401394 C17orf107Q6ZR85 190 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 BIVMQ86UB2 503 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 SLITRK4Q8IW52 837 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 CMIPQ8IY22 773 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 OR14C36Q8NHC7 312 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 ST8SIA2Q92186 375 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 TSACCQ96A04 125 aaPredicted RBP19.21■□□□□ 0.67
CTCF-202ENST00000401394 TAS2R10Q9NYW0 307 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 ZNF230Q9UIE0 474 aaPredicted RBP19.21■□□□□ 0.67
CTCF-202ENST00000401394 TRAV8-7A0A075B6U6 113 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 TMEM72A0PK05 275 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 KDM4BO94953 1096 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 CTNNB1P35222 781 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 NUP62P37198 522 aaPredicted RBP19.21■□□□□ 0.67
CTCF-202ENST00000401394 TAS2R43P59537 309 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 STX4Q12846 297 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 PPP1R14AQ96A00 147 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 WDR87Q6ZQQ6 2873 aa19.21■□□□□ 0.67
CTCF-202ENST00000401394 A0A0B4J2E0 115 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 A0A1B0GX12 115 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 C1QTNF3-AMACRE9PGA6 284 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 ARL6IP5O75915 188 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 DBIP07108 87 aaKnown RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 ITPKBP27987 946 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 HTRA3P83110 453 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 DYRK1AQ13627 763 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 ERV3-1Q14264 604 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 RGS7BPQ6MZT1 257 aaPredicted RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 PAQR7Q86WK9 346 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 FCAMRQ8WWV6 532 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 KLHL9Q9P2J3 617 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 CHRNA9Q9UGM1 479 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 C17orf51A8MQB3 221 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 ACAA2P42765 397 aaKnown RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 FNTBP49356 437 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 CST6Q15828 149 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 DEFB110Q30KQ9 67 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 FHL5Q5TD97 284 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 ZNF613Q6PF04 617 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 LMF1Q96S06 567 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 MNTQ99583 582 aa19.2■□□□□ 0.66
CTCF-202ENST00000401394 PITHD1Q9GZP4 211 aaPredicted RBP19.2■□□□□ 0.66
CTCF-202ENST00000401394 C12orf10Q9HB07 376 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms