RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PTGS2P35354 604 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 CDH15P55291 814 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SLC26A5P58743 744 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 MYBPHQ13203 477 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 GINS1Q14691 196 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 CTU2Q2VPK5 515 aaKnown RBP9.21□□□□□ -0.94
SS18-207ENST00000577636 RNFT1Q5M7Z0 435 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ZNF468Q5VIY5 522 aaPredicted RBP9.21□□□□□ -0.94
SS18-207ENST00000577636 SLX4IPQ5VYV7 408 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 H3F3CQ6NXT2 135 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SLC27A4Q6P1M0 643 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 GPR141Q7Z602 305 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 FGD2Q7Z6J4 655 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SIAH3Q8IW03 269 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ENTHD1Q8IYW4 607 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SLC15A4Q8N697 577 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ZNF441Q8N8Z8 693 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 NFAM1Q8NET5 270 aaPredicted RBP9.21□□□□□ -0.94
SS18-207ENST00000577636 OR8J1Q8NGP2 316 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 RHOXF1Q8NHV9 184 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 M1APQ8TC57 530 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 TMUB1Q9BVT8 246 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 NDEL1Q9GZM8 345 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 LAT2Q9GZY6 243 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 GSX1Q9H4S2 264 aaPredicted RBP9.21□□□□□ -0.94
SS18-207ENST00000577636 KCNJ16Q9NPI9 418 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 SDHAF3Q9NRP4 125 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 TBC1D23Q9NUY8 699 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 CNIH4Q9P003 139 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 TNFRSF10DQ9UBN6 386 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 REV1Q9UBZ9 1251 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 NPFFR2Q9Y5X5 522 aa9.21□□□□□ -0.94
SS18-207ENST00000577636 ITPR3Q14573 2671 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TRIM64A6NGJ6 449 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ELOA3DA6NLF2 546 aaPredicted RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 EFCAB9A8MZ26 197 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ALG1L2C9J202 215 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TP53I11O14683 189 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TFECO14948 347 aaPredicted RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 HCRTR2O43614 444 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 RGS10O43665 173 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TSPAN2O60636 221 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 HCN1O60741 890 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ICOSLGO75144 302 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SLC25A12O75746 678 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 NEURL1O76050 574 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 NUDT14O95848 222 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 HMGN1P05114 100 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SAGP10523 405 aaPredicted RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 PGCP20142 388 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 EPHA2P29317 976 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 FMO3P31513 532 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ACAA2P42765 397 aaKnown RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 OMPP47874 163 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SNRPGP62308 76 aaKnown RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 PRKCDQ05655 676 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SKP2Q13309 424 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TMEM44Q2T9K0 475 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ELOA3BQ3SY89 546 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 MEDAGQ5VYS4 303 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TMEM211Q6ICI0 200 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 NUP54Q7Z3B4 507 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 RPS19BP1Q86WX3 136 aaKnown RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 CCDC71Q8IV32 467 aaPredicted RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 SLC43A2Q8N370 569 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 CLDN22Q8N7P3 220 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 GATSQ8NAP1 163 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 APCDD1LQ8NCL9 501 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ELOA3Q8NG57 546 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 ASB5Q8WWX0 329 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 RND1Q92730 232 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 BPIFA2Q96DR5 249 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 TUBA1CQ9BQE3 449 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SLC19A3Q9BZV2 496 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 SLC25A19Q9HC21 320 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 MMP25Q9NPA2 562 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 NPDC1Q9NQX5 325 aaPredicted RBP9.2□□□□□ -0.94
SS18-207ENST00000577636 PLCXD1Q9NUJ7 323 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 CARD8Q9Y2G2 431 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 HRH3Q9Y5N1 445 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 CDH10Q9Y6N8 788 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 CACNA1CQ13936 2221 aa9.2□□□□□ -0.94
SS18-207ENST00000577636 GTF3C1Q12789 2109 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 PRRC2AP48634 2157 aaKnown RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 IRGMA1A4Y4 181 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 EFCAB10A6NFE3 127 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 WWP2O00308 870 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 KPNA4O00629 521 aaPredicted RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 PRKNO60260 465 aaPredicted RBP9.19□□□□□ -0.94
SS18-207ENST00000577636 TOXO94900 526 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 TFAP2AP05549 437 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 KLK2P20151 261 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 CHRNB4P30926 498 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 GPR4P46093 362 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 GIPRP48546 466 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 PCYT1AP49585 367 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 MEOX1P50221 254 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 CTBP2P56545 445 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 MVKQ03426 396 aa9.19□□□□□ -0.94
SS18-207ENST00000577636 PMPCAQ10713 525 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms