RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 UBL7Q96S82 380 aaPredicted RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 TM9SF2Q99805 663 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 NEURL2Q9BR09 285 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 VN1R1Q9GZP7 353 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 SLC26A1Q9H2B4 701 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 MIXL1Q9H2W2 232 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CAPN10Q9HC96 672 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 MMP25Q9NPA2 562 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 SLC22A11Q9NSA0 550 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 SNTG1Q9NSN8 517 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 RYDENQ9NUL5 291 aaKnown RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 DHCR7Q9UBM7 475 aaKnown RBP9.8□□□□□ -0.84
USP4-214ENST00000491791 ZNF229Q9UJW7 825 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 MOKQ9UQ07 419 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 CMAHPQ9Y471 501 aa9.8□□□□□ -0.84
USP4-214ENST00000491791 ATRXP46100 2492 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ABCA7Q8IZY2 2146 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 OR6C70A6NIJ9 312 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ELOA3DA6NLF2 546 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 VSTM2BA6NLU5 285 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 C1QTNF9BB2RNN3 333 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 MCIDASD6RGH6 385 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 GABRPO00591 440 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 OIP5O43482 229 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 FADS1O60427 444 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 FZD7O75084 574 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 RGS9O75916 674 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 APOL3O95236 402 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 CD14P08571 375 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 C1QTNF9P0C862 333 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 HPGDP15428 266 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 HIST1H1CP16403 213 aaKnown RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 NAGAP17050 411 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 MST1P26927 711 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NOS3P29474 1203 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 SEPHS1P49903 392 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ACTA2P62736 377 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ACTG2P63267 376 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 EGR4Q05215 589 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NSDHLQ15738 373 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ELOA3BQ3SY89 546 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 CDONQ4KMG0 1287 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 DDI2Q5TDH0 399 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ZNF385CQ66K41 422 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 FAAH2Q6GMR7 532 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 C5orf46Q6UWT4 87 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 TRILQ7L0X0 811 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 VASH1Q7L8A9 365 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 SHFQ7M4L6 423 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 SLC29A4Q7RTT9 530 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 FAM122BQ7Z309 247 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 SLC22A16Q86VW1 577 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 KLBQ86Z14 1044 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 TMEM99Q8N816 258 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 KDF1Q8NAX2 398 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 NFAM1Q8NET5 270 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 ELOA3Q8NG57 546 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 OR5W2Q8NH69 310 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NUBPLQ8TB37 319 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 PHOSPHO1Q8TCT1 267 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 SMPDL3BQ92485 455 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NAT6Q93015 286 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ABTB1Q969K4 478 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 EFHD2Q96C19 240 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 TMCO6Q96DC7 493 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 MRPL48Q96GC5 212 aaKnown RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 CEP19Q96LK0 163 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ERMAPQ96PL5 475 aaPredicted RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 SNX18Q96RF0 628 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 MNTQ99583 582 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NUDT22Q9BRQ3 303 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 OR8D2Q9GZM6 311 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 NDEL1Q9GZM8 345 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 SRRQ9GZT4 340 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP4-214ENST00000491791 ZCCHC4Q9H5U6 513 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 MED20Q9H944 212 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ISG20L2Q9H9L3 353 aaKnown RBP9.79□□□□□ -0.84
USP4-214ENST00000491791 FKRPQ9H9S5 495 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 COPS7AQ9UBW8 275 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 ZMIZ1Q9ULJ6 1067 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 PCDHGB2Q9Y5G2 931 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 IGF2RP11717 2491 aa9.79□□□□□ -0.84
USP4-214ENST00000491791 hCG_2014768A0A024R1R8 64 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ETV2O00321 342 aaPredicted RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 TBX1O43435 398 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 NPIPB7O75200 414 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 GLCEO94923 617 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 MT-ATP6P00846 226 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 HLA-DQB1P01920 261 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 PGCP20142 388 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 GRK6P43250 576 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 CD97P48960 835 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 TGM4P49221 684 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 NRG3P56975 720 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 PPP3R1P63098 170 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ZNF117Q03924 483 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 MRPL28Q13084 256 aaKnown RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 HNRNPA0Q13151 305 aaKnown RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 EFR3AQ14156 821 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms