RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CLDN24A6NM45 220 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 AP3D1O14617 1153 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 ZNF208O43345 1280 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 IGKV3-15P01624 115 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 TFP02787 698 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 PROCP04070 461 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 SAGP10523 405 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 TCN1P20061 433 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 SOAT1P35610 550 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 RPL3P39023 403 aaKnown RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 SELENOPP49908 381 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 LMO4P61968 165 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 HBA1P69905 142 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 PLAURQ03405 335 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 CEACAM7Q14002 265 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 PDCD2Q16342 344 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 MIDNQ504T8 468 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 AP1ARQ63HQ0 302 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 ZNF572Q7Z3I7 529 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 C16orf62Q7Z3J2 963 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 GPAT4Q86UL3 456 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 ARFGAP2Q8N6H7 521 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 FAM169BQ8N8A8 192 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 MAGEE2Q8TD90 523 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 IFT81Q8WYA0 676 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 ALKBH3Q96Q83 286 aaPredicted RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 SLC6A7Q99884 636 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 SF3B5Q9BWJ5 86 aaKnown RBP13.94□□□□□ -0.18
USP48-210ENST00000489108 SUCNR1Q9BXA5 334 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 TSPYL1Q9H0U9 437 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 NELFAQ9H3P2 528 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 REV1Q9UBZ9 1251 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 DNAJC15Q9Y5T4 150 aa13.94□□□□□ -0.18
USP48-210ENST00000489108 TRAV20A0A0B4J274 112 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 IGHV2OR16-5A0A0B4J2B6 119 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 TMEM114B3SHH9 223 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 UPK3AO75631 287 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 PNPP00491 289 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 HPXP02790 462 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 CBR1P16152 277 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 TACR3P29371 465 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 HTR3AP46098 478 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 POLR2HP52434 150 aaKnown RBP13.93□□□□□ -0.18
USP48-210ENST00000489108 KCNJ10P78508 379 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 PTGR1Q14914 329 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 TMEM225Q6GV28 225 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 TYW3Q6IPR3 259 aaKnown RBP13.93□□□□□ -0.18
USP48-210ENST00000489108 RNF165Q6ZSG1 346 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 KRTCAP2Q8N6L1 136 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 NATD1Q8N6N6 113 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 CNOT9Q92600 299 aaKnown RBP13.93□□□□□ -0.18
USP48-210ENST00000489108 MRPL24Q96A35 216 aaKnown RBP13.93□□□□□ -0.18
USP48-210ENST00000489108 FMO2Q99518 471 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 ATAD3AQ9NVI7 634 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 OXSMQ9NWU1 459 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 CMAHPQ9Y471 501 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 WDR45Q9Y484 360 aa13.93□□□□□ -0.18
USP48-210ENST00000489108 WNK2Q9Y3S1 2297 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 A0A1W2PPM1 405 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 TMEM229AB2RXF0 380 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 BCL10O95999 233 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 ARAFP10398 606 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 HOXB1P14653 301 aaPredicted RBP13.92□□□□□ -0.18
USP48-210ENST00000489108 ACHEP22303 614 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 CASQ1P31415 396 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 FOXL1Q12952 345 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 SNTB2Q13425 540 aaKnown RBP13.92□□□□□ -0.18
USP48-210ENST00000489108 DAG1Q14118 895 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 OR7A5Q15622 319 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 MSMPQ1L6U9 139 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 SLC9B1Q4ZJI4 515 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 KRT80Q6KB66 452 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 DDIASQ8IXT1 998 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 TEX29Q8N6K0 151 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 XAGE5Q8WWM1 108 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 RDH5Q92781 318 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 YIPF5Q969M3 257 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 SLC35G5Q96KT7 338 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 ZNF317Q96PQ6 595 aaPredicted RBP13.92□□□□□ -0.18
USP48-210ENST00000489108 OR51I1Q9H343 314 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 PIF1Q9H611 641 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 G6PC2Q9NQR9 355 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 EXOSC3Q9NQT5 275 aaKnown RBP13.92□□□□□ -0.18
USP48-210ENST00000489108 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.92□□□□□ -0.18
USP48-210ENST00000489108 EXD2Q9NVH0 621 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 PYCARDQ9ULZ3 195 aa13.92□□□□□ -0.18
USP48-210ENST00000489108 ZNF503-AS2A6NEH8 195 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 LIPT2A6NK58 231 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 AQP7P3A6NL99 342 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 PPIHO43447 177 aaKnown RBP13.91□□□□□ -0.18
USP48-210ENST00000489108 SYNGR3O43761 229 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 PEX11AO75192 247 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 CHEK2O96017 543 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 GPIP06744 558 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 OR12D1P0DN82 309 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 HKR1P10072 659 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 CPA3P15088 417 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 ECHS1P30084 290 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 SEC24CP53992 1094 aa13.91□□□□□ -0.18
USP48-210ENST00000489108 TMEM33P57088 247 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms