RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TBL1XR1Q9BZK7 514 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 TSPAN10Q9H1Z9 355 aaPredicted RBP12.53□□□□□ -0.4
USP42-206ENST00000479544 A4GALTQ9NPC4 353 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 MARCH5Q9NX47 278 aa12.53□□□□□ -0.4
USP42-206ENST00000479544 A0A0A6YYH2 397 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 A6NJ64 397 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 PRKNO60260 465 aaPredicted RBP12.52□□□□□ -0.4
USP42-206ENST00000479544 HTR3BO95264 441 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 RHOP08100 348 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 AKAIN1P0CW23 69 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 HMGA1P17096 107 aaKnown RBP12.52□□□□□ -0.4
USP42-206ENST00000479544 NRG3P56975 720 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 H3F3CQ6NXT2 135 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 TMEM81Q6P7N7 255 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 GAREM2Q75VX8 874 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 OR4D9Q8NGE8 314 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 NPRL2Q8WTW4 380 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 TCEAL3Q969E4 200 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 AHCYL2Q96HN2 611 aaKnown RBP12.52□□□□□ -0.4
USP42-206ENST00000479544 TSSK2Q96PF2 358 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 HRASLSQ9HDD0 168 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 ZNF701Q9NV72 531 aaPredicted RBP12.52□□□□□ -0.4
USP42-206ENST00000479544 PARPBPQ9NWS1 579 aa12.52□□□□□ -0.4
USP42-206ENST00000479544 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 TNFSF12O43508 249 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 FZD6O60353 706 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 AKR1C3P42330 323 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 SELENOPP49908 381 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 AGERQ15109 404 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 ZNF628Q5EBL2 1059 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 DPY19L4Q7Z388 723 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 SVBPQ8N300 66 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 OR4C15Q8NGM1 316 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 SCARB1Q8WTV0 552 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 MOAP1Q96BY2 351 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 TAS2R8Q9NYW2 309 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 NPC1O15118 1278 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 F11P03951 625 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 ATF1P18846 271 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 RAB3AP20336 220 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 RBMS2Q15434 407 aaKnown RBP12.52□□□□□ -0.41
USP42-206ENST00000479544 TUSC1Q2TAM9 212 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 OR7E24Q6IFN5 339 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 MBOAT2Q6ZWT7 520 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 ABHD13Q7L211 337 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 RADILQ96JH8 1075 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 CYSLTR2Q9NS75 346 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 EMC3Q9P0I2 261 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 GPN3Q9UHW5 284 aaPredicted RBP12.52□□□□□ -0.41
USP42-206ENST00000479544 A4GNTQ9UNA3 340 aa12.52□□□□□ -0.41
USP42-206ENST00000479544 TMEM82A0PJX8 343 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 H3BNC9 293 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 PEX12O00623 359 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 UBBP0CG47 229 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 UBCP0CG48 685 aaKnown RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 F3P13726 295 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SYN1P17600 705 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SRMP19623 302 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SLC9A3R2Q15599 337 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 MAPK14Q16539 360 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 LINC00303Q3SY05 128 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 RPL13AP3Q6NVV1 102 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 AMER3Q8N944 861 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 WDR89Q96FK6 387 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 DTD2Q96FN9 168 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 C20orf24Q9BUV8 137 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 NRIP3Q9NQ35 241 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 ACSS1Q9NUB1 689 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 HRASLS2Q9NWW9 162 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 RAB19A4D1S5 217 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SCDO00767 359 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 IGLV3-27P01718 113 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 HOXB5P09067 269 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 IL12BP29460 328 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 ACTBP60709 375 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 EIF5AP63241 154 aaKnown RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 ACTG1P63261 375 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 UBE2IP63279 158 aaKnown RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 POU4F2Q12837 409 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 GLYR1Q49A26 553 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 LCTLQ6UWM7 567 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 PM20D2Q8IYS1 436 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 PLPP7Q8NBV4 271 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 OR4D11Q8NGI4 311 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 OR4Q3Q8NH05 313 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 THAP3Q8WTV1 239 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 DGAT2Q96PD7 388 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 MS4A4EQ96PG1 132 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 SSC5DA1L4H1 1573 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 D6RAR5 112 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 LCMT2O60294 686 aaKnown RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 CFDP00746 253 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 CDK2P24941 298 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 RORAP35398 523 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 C1orf61Q13536 156 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 PDE7AQ13946 482 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 KCNAB1Q14722 419 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 LGALSLQ3ZCW2 172 aaPredicted RBP12.51□□□□□ -0.41
USP42-206ENST00000479544 CLLU1Q5K131 121 aa12.51□□□□□ -0.41
USP42-206ENST00000479544 NKAPLQ5M9Q1 402 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms