RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 NSUN5P2Q63ZY6 315 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 OR4N4Q8N0Y3 316 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 TMEM199Q8N511 208 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 AMER3Q8N944 861 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 DCUN1D4Q92564 292 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 LPAR1Q92633 364 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SENP5Q96HI0 755 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 GPR78Q96P69 363 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 AP1S3Q96PC3 154 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SNHG12Q9BXW3 62 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 CHST11Q9NPF2 352 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 OXSMQ9NWU1 459 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 MED29Q9NX70 200 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 FBXW11Q9UKB1 542 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 NIP7Q9Y221 180 aaKnown RBP eCLIP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RNF11Q9Y3C5 154 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 CDH10Q9Y6N8 788 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 V9GYS6 101 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 A0A1W2PP64 1363 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 CHD3Q12873 2000 aaKnown RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ANXA2P2A6NMY6 339 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 XRCC3O43542 346 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SYT7O43581 403 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ANXA9O76027 345 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 VENTXO95231 258 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ANXA2P07355 339 aaKnown RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 GIPP09681 153 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 GABRA5P31644 462 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RPL24P83731 157 aaKnown RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ZNF415Q09FC8 603 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RAB32Q13637 225 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SLC17A1Q14916 467 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 COL28A1Q2UY09 1125 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PYY3Q5JQD4 70 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PSAPL1Q6NUJ1 521 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PRSS57Q6UWY2 283 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 TOMM20LQ6UXN7 152 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 LIMS2Q7Z4I7 341 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 UNC93AQ86WB7 457 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PTOV1Q86YD1 416 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 TMEM126BQ8IUX1 230 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 AMER2Q8N7J2 671 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 HPSE2Q8WWQ2 592 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 MBD3L1Q8WWY6 194 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 CFHR4Q92496 578 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ANKRD9Q96BM1 317 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 CMTM7Q96FZ5 175 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 FAM110AQ9BQ89 295 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 KCNK15Q9H427 330 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ACSS3Q9H6R3 686 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 NANSQ9NR45 359 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ERVK13-1Q9NX77 482 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 MEMO1Q9Y316 297 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RIMS2Q9UQ26 1411 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ARAP3Q8WWN8 1544 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 KDM6AO15550 1401 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 YJEFN3A6XGL0 299 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 GPR25O00155 361 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 MSCO60682 206 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 F3P13726 295 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 FSHRP23945 695 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 ADORA2AP29274 412 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PRSS12P56730 875 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 GNG3P63215 75 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 NTHL1P78549 312 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 PPP3CAQ08209 521 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SPOCK1Q08629 439 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 OTUD3Q5T2D3 398 aaPredicted RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 IZUMO1Q8IYV9 350 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 BEST4Q8NFU0 473 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 OR8D4Q8NGM9 314 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 MCHR2Q969V1 340 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 FUBP1Q96AE4 644 aaKnown RBP4.96□□□□□ -1.62
PTPN4-203ENST00000430976 HHIPL1Q96JK4 782 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 SNX22Q96L94 193 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 OMDQ99983 421 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 DCSTAMPQ9H295 470 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RPS10P5Q9NQ39 176 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 RCE1Q9Y256 329 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 TNRQ92752 1358 aa4.96□□□□□ -1.62
PTPN4-203ENST00000430976 IQGAP2Q13576 1575 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 ATG2BQ96BY7 2078 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 FAM230AA0A1W2PPH8 454 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 CHADO15335 359 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 HMGB3O15347 200 aaKnown RBP4.95□□□□□ -1.62
PTPN4-203ENST00000430976 CLDN9O95484 217 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 TTLL1O95922 423 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 CST4P01036 141 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 PPBPP02775 128 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 MT-ND1P03886 318 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 HAPLN1P10915 354 aaPredicted RBP4.95□□□□□ -1.62
PTPN4-203ENST00000430976 IL1RNP18510 177 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 TCN2P20062 427 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 PGCP20142 388 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 IVDP26440 423 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 SDHAP31040 664 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 THBS3P49746 956 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 TDGF1P3P51864 188 aa4.95□□□□□ -1.62
PTPN4-203ENST00000430976 NCS1P62166 190 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms