RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FAM53CQ9NYF3 392 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 FAM25EA8MYX2 175 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 TNFSF11O14788 317 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ACP1P24666 158 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 HLCSP50747 726 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 CLDN15P56746 228 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 PUDPQ08623 228 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 TUBA3CQ13748 450 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 MEPCEQ7L2J0 689 aaKnown RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 KLHDC8BQ8IXV7 354 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZNF454Q8N9F8 522 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 CPEB3Q8NE35 698 aaKnown RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 GIMAP5Q96F15 307 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZC3HAV1LQ96H79 300 aaKnown RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 J3KTA2 159 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 TBX19O60806 448 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 VHLLQ6RSH7 139 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 SLC25A45Q8N413 288 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ZNF71Q9NQZ8 489 aaPredicted RBP9.33□□□□□ -0.92
USP54-201ENST00000339859 SLAMF8Q9P0V8 285 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 COMMD3Q9UBI1 195 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 ST14Q9Y5Y6 855 aa9.33□□□□□ -0.92
USP54-201ENST00000339859 A0A1W2PR77 199 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 OR5H15A6NDH6 313 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CD3GP09693 182 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 MAP2K6P52564 334 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 LHFPL3Q86UP9 236 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 KLBQ86Z14 1044 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CNOT9Q92600 299 aaKnown RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 CPNE4Q96A23 557 aaPredicted RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 ZNF775Q96BV0 537 aaPredicted RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 SLC7A6OSQ96CW6 309 aaPredicted RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 PHF12Q96QT6 1004 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 ING3Q9NXR8 418 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 TMEM9Q9P0T7 183 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 HERV-K104P61576 105 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 PLCXD3Q63HM9 321 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 MAVSQ7Z434 540 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 MS4A15Q8N5U1 240 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 TAMM41Q96BW9 452 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 COG8Q96MW5 612 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 MUS81Q96NY9 551 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 C1orf198Q9H425 327 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 TMEM74BQ9NUR3 256 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 USP22Q9UPT9 525 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 AKR7A3O95154 331 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 RAB3AP20336 220 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 AQP2P41181 271 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 TMEM244Q5VVB8 128 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 FCRLAQ7L513 359 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CEACAM19Q7Z692 300 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 AKAP1Q92667 903 aaKnown RBP eCLIP9.32□□□□□ -0.92
USP54-201ENST00000339859 NXF5Q9H1B4 397 aaKnown RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 TANC1Q9C0D5 1861 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CCRL2O00421 344 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 ARR3P36575 388 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 RAB14P61106 215 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 BEST3Q8N1M1 668 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CYB561A3Q8NBI2 242 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 ZCCHC14Q8WYQ9 949 aaKnown RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 KATNB1Q9BVA0 655 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 CST11Q9H112 138 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 TSPAN10Q9H1Z9 355 aaPredicted RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 FKRPQ9H9S5 495 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 RNF6Q9Y252 685 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 HDGFL3Q9Y3E1 203 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 LNP1A1A4G5 178 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 FABP12A6NFH5 140 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 PLOD2O00469 737 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 EML2O95834 649 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 ITGAMP11215 1152 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 LSSP48449 732 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 ADGRG5Q8IZF4 528 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 FAM60AQ9NP50 221 aa9.32□□□□□ -0.92
USP54-201ENST00000339859 MEPEQ9NQ76 525 aaPredicted RBP9.32□□□□□ -0.92
USP54-201ENST00000339859 TRBV4-1A0A0J9YWV2 114 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 SLC19A2O60779 497 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 LGI1O95970 557 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 HNRNPCP07910 306 aaKnown RBP eCLIP9.31□□□□□ -0.92
USP54-201ENST00000339859 ELK4P28324 431 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 ARHGDIBP52566 201 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 GMFBP60983 142 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 SPIN3Q5JUX0 258 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 POC5Q8NA72 575 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 RAB39BQ96DA2 213 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 FAM71F1Q96KD3 344 aaPredicted RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 OXGR1Q96P68 337 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 SMURF1Q9HCE7 757 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 MEGF11A6BM72 1044 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 KDM4EB2RXH2 506 aaPredicted RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 CDRT1O95170 752 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 MT-ND2P03891 347 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 PTGS2P35354 604 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 BCAP31P51572 246 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 TUBA1BP68363 451 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 TUBA4AP68366 448 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 TUBA1AQ71U36 451 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 TMEM255BQ8WV15 326 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 FAM46BQ96A09 425 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms