RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 VRK3Q8IV63 474 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 FAM71E2Q8N5Q1 922 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 NPRL2Q8WTW4 380 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 MARC2Q969Z3 335 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 AMDHD1Q96NU7 426 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 LTB4R2Q9NPC1 389 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 HS3ST2Q9Y278 367 aa11.95□□□□□ -0.5
COL3A1-201ENST00000304636 CNOT4O95628 575 aaKnown RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 RAF1P04049 648 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 DEFA6Q01524 100 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SLC2A12Q8TD20 617 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 DNTTIP1Q9H147 329 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 LIN7BQ9HAP6 207 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 GFOD1Q9NXC2 390 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 CLDND1Q9NY35 253 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 PEX12O00623 359 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 PRICKLE3O43900 615 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 FBXO24O75426 580 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 REEP5Q00765 189 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 CRMP1Q14194 572 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 BAK1Q16611 211 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 OR7E24Q6IFN5 339 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 FAHD1Q6P587 224 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 KLHDC9Q8NEP7 349 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 OR4K15Q8NH41 348 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM255BQ8WV15 326 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SEC22AQ96IW7 307 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 RTP3Q9BQQ7 232 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ACKR4Q9NPB9 350 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 KCNIP1Q9NZI2 227 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 RABIFP47224 123 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SLC9A3R2Q15599 337 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 FAM69BQ5VUD6 431 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM106AQ96A25 262 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SFXN2Q96NB2 322 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SLC25A21Q9BQT8 299 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SEC22CQ9BRL7 303 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 MCOLN1Q9GZU1 580 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 GLIPR2Q9H4G4 154 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ZNF385DQ9H6B1 395 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SLC6A20Q9NP91 592 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 UBQLN4Q9NRR5 601 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 KLHL13Q9P2N7 655 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 CPNE7Q9UBL6 633 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 STEAP1Q9UHE8 339 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SCML1Q9UN30 329 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM72A0PK05 275 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SRMP19623 302 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 HLA-FP30511 346 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TNFRSF17Q02223 184 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SELENBP1Q13228 472 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 PXDC1Q5TGL8 231 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM164Q5U3C3 297 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ANKRD34AQ69YU3 496 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SLC22A25Q6T423 547 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 USP51Q70EK9 711 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 OVCH1Q7RTY7 1134 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ABHD12BQ7Z5M8 362 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 OR56B2PQ8NGI1 322 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 LRRC46Q96FV0 321 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 KATNB1Q9BVA0 655 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 UBQLN3Q9H347 655 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 EHFQ9NZC4 300 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ZNF705FA8MVS1 300 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SURF4O15260 269 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 SERPINE2P07093 398 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ZNF705DP0CH99 300 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 ZNF705BP0CI00 300 aaPredicted RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 PPT1P50897 306 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 CLDN20P56880 219 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 RPL23AP62750 156 aaKnown RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM184AQ6ZMB5 413 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 MEX3BQ6ZN04 569 aaKnown RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 DCLRE1CQ96SD1 692 aaKnown RBP11.94□□□□□ -0.5
COL3A1-201ENST00000304636 KIF25Q9UIL4 384 aa11.94□□□□□ -0.5
COL3A1-201ENST00000304636 HSF5Q4G112 596 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 TAS1R1Q7RTX1 841 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 TMEM179BQ7Z7N9 219 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 HAS2Q92819 552 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 SLAMF9Q96A28 289 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 MIB2Q96AX9 1013 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 PIGMQ9H3S5 423 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 SOCS7O14512 581 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 CTHP32929 405 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 DHPSP49366 369 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 SLC22A6Q4U2R8 563 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 VASNQ6EMK4 673 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 LPCAT3Q6P1A2 487 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 COX15Q7KZN9 410 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 DIO2Q92813 273 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 TBC1D20Q96BZ9 403 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 GAS2L1Q99501 681 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 RBM38Q9H0Z9 239 aaKnown RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 EPHX3Q9H6B9 360 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 A0A0A6YYC8 382 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 TMX2-CTNND1H3BSU7 103 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 GABARAPH6UMI1 98 aa11.93□□□□□ -0.5
COL3A1-201ENST00000304636 I3L1I5 382 aaPredicted RBP11.93□□□□□ -0.5
COL3A1-201ENST00000304636 KCNK2O95069 426 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms