RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W UBC9P50623 157 aaPredicted RBP2□□□□□ -2.09
PRP42YDR235W MRK1P50873 501 aa2□□□□□ -2.09
PRP42YDR235W UBC11P52492 156 aa2□□□□□ -2.09
PRP42YDR235W HDA1P53973 706 aa2□□□□□ -2.09
PRP42YDR235W YPL068CQ02749 293 aa2□□□□□ -2.09
PRP42YDR235W HIR1P32479 840 aa1.99□□□□□ -2.09
PRP42YDR235W MBP1P39678 833 aa1.99□□□□□ -2.09
PRP42YDR235W ARG2P40360 574 aa1.99□□□□□ -2.09
PRP42YDR235W ESC2Q06340 456 aa1.99□□□□□ -2.09
PRP42YDR235W CDC34P14682 295 aa1.99□□□□□ -2.09
PRP42YDR235W PPH3P32345 308 aa1.99□□□□□ -2.09
PRP42YDR235W SPC29P33419 253 aa1.99□□□□□ -2.09
PRP42YDR235W UBS1P38290 277 aa1.99□□□□□ -2.09
PRP42YDR235W REV7P38927 245 aa1.99□□□□□ -2.09
PRP42YDR235W ABD1P32783 436 aaPredicted RBP1.98□□□□□ -2.09
PRP42YDR235W PZF1P39933 429 aa1.98□□□□□ -2.09
PRP42YDR235W YLR415CO13578 112 aa1.97□□□□□ -2.09
PRP42YDR235W ADE8P04161 214 aa1.97□□□□□ -2.09
PRP42YDR235W APN1P22936 367 aa1.97□□□□□ -2.09
PRP42YDR235W MET10P39692 1035 aa1.97□□□□□ -2.09
PRP42YDR235W FYV10P40492 516 aa1.97□□□□□ -2.09
PRP42YDR235W GUS1P46655 708 aaKnown RBP RIP-Chip data1.97□□□□□ -2.09not detected
PRP42YDR235W STP1Q00947 519 aa1.97□□□□□ -2.09
PRP42YDR235W MUS81Q04149 632 aaPredicted RBP1.97□□□□□ -2.09
PRP42YDR235W YDR306CQ06640 478 aa1.97□□□□□ -2.09
PRP42YDR235W TGL5Q12043 749 aa1.97□□□□□ -2.09
PRP42YDR235W ATG11Q12527 1178 aa1.97□□□□□ -2.09
PRP42YDR235W PHR1P05066 565 aaKnown RBP RIP-Chip data1.96□□□□□ -2.1not detected
PRP42YDR235W SIR3P06701 978 aa1.96□□□□□ -2.1
PRP42YDR235W PYC1P11154 1178 aaKnown RBP1.96□□□□□ -2.1
PRP42YDR235W RPS9AO13516 197 aaKnown RBP1.95□□□□□ -2.1
PRP42YDR235W URA1P28272 314 aaPredicted RBP1.95□□□□□ -2.1
PRP42YDR235W AFR1P33304 620 aa1.95□□□□□ -2.1
PRP42YDR235W FMP30Q02883 468 aa1.95□□□□□ -2.1
PRP42YDR235W RPA135P22138 1203 aaKnown RBP1.95□□□□□ -2.1
PRP42YDR235W CCR4P31384 837 aaKnown RBP1.95□□□□□ -2.1
PRP42YDR235W YRO2P38079 344 aa1.95□□□□□ -2.1
PRP42YDR235W MUP3P38734 546 aa1.95□□□□□ -2.1
PRP42YDR235W SAK1P38990 1142 aa1.95□□□□□ -2.1
PRP42YDR235W CCT4P39078 528 aaKnown RBP1.95□□□□□ -2.1
PRP42YDR235W YJR107WP47145 328 aa1.95□□□□□ -2.1
PRP42YDR235W NEW1Q08972 1196 aaKnown RBP1.95□□□□□ -2.1
PRP42YDR235W YKL033W-AQ86ZR7 236 aa1.95□□□□□ -2.1
PRP42YDR235W BAP3P41815 604 aa1.94□□□□□ -2.1
PRP42YDR235W KRI1P42846 591 aaKnown RBP1.94□□□□□ -2.1
PRP42YDR235W POL32P47110 350 aa1.94□□□□□ -2.1
PRP42YDR235W CCM1P48237 864 aaPredicted RBP1.94□□□□□ -2.1
PRP42YDR235W DUS1P53759 423 aaKnown RBP1.94□□□□□ -2.1
PRP42YDR235W RMD1Q03441 430 aa1.94□□□□□ -2.1
PRP42YDR235W AAR2P32357 355 aaPredicted RBP1.93□□□□□ -2.1
PRP42YDR235W PET112P33893 541 aa1.93□□□□□ -2.1
PRP42YDR235W ULP2P40537 1034 aaPredicted RBP1.93□□□□□ -2.1
PRP42YDR235W PFA3P42836 336 aa1.93□□□□□ -2.1
PRP42YDR235W SSY5P47002 699 aa1.93□□□□□ -2.1
PRP42YDR235W IRC8P47046 822 aa1.93□□□□□ -2.1
PRP42YDR235W ATG4P53867 494 aa1.93□□□□□ -2.1
PRP42YDR235W VPS16Q03308 798 aa1.93□□□□□ -2.1
PRP42YDR235W SBA1P28707 216 aaKnown RBP1.92□□□□□ -2.1
PRP42YDR235W SFB3P38810 929 aa1.92□□□□□ -2.1
PRP42YDR235W CCT3P39077 534 aaKnown RBP1.92□□□□□ -2.1
PRP42YDR235W PAN2P53010 1115 aaPredicted RBP1.92□□□□□ -2.1
PRP42YDR235W MLH3Q12083 715 aa1.92□□□□□ -2.1
PRP42YDR235W HAL9Q12180 1030 aa1.92□□□□□ -2.1
PRP42YDR235W ATE1P16639 503 aa1.91□□□□□ -2.1
PRP42YDR235W JSN1P47135 1091 aaKnown RBP RIP-Chip data1.91□□□□□ -2.1not detected
PRP42YDR235W EAF1Q06337 982 aa1.91□□□□□ -2.1
PRP42YDR235W SLD2P34252 453 aa1.91□□□□□ -2.1
PRP42YDR235W SIC1P38634 284 aa1.91□□□□□ -2.1
PRP42YDR235W PSA1P41940 361 aaKnown RBP1.91□□□□□ -2.1
PRP42YDR235W TAX4P47030 604 aa1.91□□□□□ -2.1
PRP42YDR235W GAD1Q04792 585 aa1.91□□□□□ -2.1
PRP42YDR235W ADE5,7P07244 802 aaKnown RBP1.9□□□□□ -2.11
PRP42YDR235W MBR1P23493 339 aa1.9□□□□□ -2.11
PRP42YDR235W AGP1P25376 633 aa1.9□□□□□ -2.11
PRP42YDR235W CYS3P31373 394 aaKnown RBP1.9□□□□□ -2.11
PRP42YDR235W ERT1P38140 529 aa1.9□□□□□ -2.11
PRP42YDR235W YBR259WP38338 688 aa1.9□□□□□ -2.11
PRP42YDR235W SIT1P39980 628 aa1.9□□□□□ -2.11
PRP42YDR235W TEX1P53851 422 aaKnown RBP1.9□□□□□ -2.11
PRP42YDR235W SEN54Q02825 467 aaPredicted RBP1.9□□□□□ -2.11
PRP42YDR235W STE12P13574 688 aa1.89□□□□□ -2.11
PRP42YDR235W SAT4P25333 603 aaKnown RBP1.89□□□□□ -2.11
PRP42YDR235W MVD1P32377 396 aaKnown RBP1.89□□□□□ -2.11
PRP42YDR235W MNR2P35724 969 aa1.89□□□□□ -2.11
PRP42YDR235W GMH1P36125 273 aa1.89□□□□□ -2.11
PRP42YDR235W TOK1P40310 691 aa1.89□□□□□ -2.11
PRP42YDR235W CCT5P40413 562 aaKnown RBP1.89□□□□□ -2.11
PRP42YDR235W YOR022CQ12204 715 aa1.89□□□□□ -2.11
PRP42YDR235W FUB1P25659 250 aa1.88□□□□□ -2.11
PRP42YDR235W UGP1P32861 499 aaKnown RBP1.88□□□□□ -2.11
PRP42YDR235W REC104P33323 182 aa1.88□□□□□ -2.11
PRP42YDR235W PHO11P35842 467 aa1.88□□□□□ -2.11
PRP42YDR235W PHO12P38693 467 aa1.88□□□□□ -2.11
PRP42YDR235W MAF1P41910 395 aa1.88□□□□□ -2.11
PRP42YDR235W FHN1P53279 174 aa1.88□□□□□ -2.11
PRP42YDR235W TPO2P53283 614 aa1.88□□□□□ -2.11
PRP42YDR235W LCD1Q04377 747 aa1.88□□□□□ -2.11
PRP42YDR235W RSC3Q06639 885 aa1.88□□□□□ -2.11
PRP42YDR235W KCC4P25389 1037 aa1.88□□□□□ -2.11
PRP42YDR235W VBA5P36172 582 aa1.88□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 77 ms