RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NOP9Q86U38 636 aaKnown RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 INO80BQ9C086 356 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 HELLSQ9NRZ9 838 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 ABCF2Q9UG63 623 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 NRBP1Q9UHY1 535 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 GJA3Q9Y6H8 435 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 NUTM2FA1L443 756 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 SYNDIG1LA6NDD5 238 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 KIF3BO15066 747 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 CHMP2AO43633 222 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TBC1D10BQ4KMP7 808 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 GRPEL1Q9HAV7 217 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TXLNBQ8N3L3 684 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 CDK5RAP3Q96JB5 506 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TSPYL2Q9H2G4 693 aaPredicted RBP4.11□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF232Q9UNY5 417 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 ATG2BQ96BY7 2078 aa4.11□□□□□ -1.75
SCN1A-221ENST00000641996 TNPO1Q92973 898 aaKnown RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC196A0A1B0GTZ2 297 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 HSD17B7P56937 341 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 ALDH1L2Q3SY69 923 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 ENOX1Q8TC92 643 aaKnown RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 NOC3LQ8WTT2 800 aaKnown RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SND1Q7KZF4 910 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 IQCF2Q8IXL9 164 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 DCLK2Q8N568 766 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 JMYQ8N9B5 988 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 GPR101Q96P66 508 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 N6AMT1Q9Y5N5 214 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 TRDNQ13061 729 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 UVSSAQ2YD98 709 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 LMNTD2Q8IXW0 634 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SEPT10Q9P0V9 454 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 RPS6KL1Q9Y6S9 549 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 FOSL2P15408 326 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 NEK10Q6ZWH5 1172 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 LRRC43Q8N309 656 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC63Q8NA47 563 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 ODF2LQ9ULJ1 636 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 FCHSD2O94868 740 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 MSL3P1P0C860 447 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 MAPK9P45984 424 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 GEMIN4P57678 1058 aaKnown RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 FXNQ16595 210 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 GJC2Q5T442 439 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 AFAP1Q8N556 730 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 VEPH1Q14D04 833 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SRLQ86TD4 932 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC144CPQ8IYA2 1237 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SEPT8Q92599 483 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 AP1G2O75843 785 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 PLA2G4EQ3MJ16 856 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 ODR4Q5SWX8 454 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SDCCAG8Q86SQ7 713 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 CEP290O15078 2479 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 KRT38O76015 456 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 ZFXP17010 805 aaPredicted RBP4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SKOR1P84550 965 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 SLC7A5Q01650 507 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 KANK3Q6NY19 840 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC80Q76M96 950 aa4.1□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM64A6NGJ6 449 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TRIM64BA6NI03 449 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 CLCN2P51788 898 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 KCTD2Q14681 263 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 CCNG2Q16589 344 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 ZNF449Q6P9G9 518 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SAPCD2Q86UD0 394 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SYNCQ9H7C4 482 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 BDNFP23560 247 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TAF11Q15544 211 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 LETM2Q2VYF4 491 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 CCDC121Q6ZUS5 278 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TDRD7Q8NHU6 1098 aaKnown RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 GABPB2Q8TAK5 448 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 DRC3Q9H069 523 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 POGKQ9P215 609 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 AFG3L2Q9Y4W6 797 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 EPS15P42566 896 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 APLP1P51693 650 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 PPP2R5BQ15173 497 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SDR16C5Q8N3Y7 309 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SELENOSQ9BQE4 189 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 PFDN4Q9NQP4 134 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SYNPO2Q9UMS6 1093 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 MRPL42Q9Y6G3 142 aaKnown RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 DCAF8L1A6NGE4 600 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 RNF8O76064 485 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 ATP2B1P20020 1258 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 SF3B3Q15393 1217 aaKnown RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 GNPTABQ3T906 1256 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TMC6Q7Z403 805 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 NANOGNBQ7Z5D8 188 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 DISC1Q9NRI5 854 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 NINQ8N4C6 2090 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 GPIHBP1Q8IV16 184 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 PPP1R14CQ8TAE6 165 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 LRRCC1Q9C099 1032 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms