RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CPA1P15085 419 aa18.85■□□□□ 0.61
CLN3-251ENST00000636853 CUL4AQ13619 759 aa18.85■□□□□ 0.61
CLN3-251ENST00000636853 HAUS7Q99871 368 aa18.85■□□□□ 0.61
CLN3-251ENST00000636853 RBM8AQ9Y5S9 174 aaKnown RBP18.85■□□□□ 0.61
CLN3-251ENST00000636853 CHGBP05060 677 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 NECTIN1Q15223 517 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 DZIP3Q86Y13 1208 aaKnown RBP18.84■□□□□ 0.61
CLN3-251ENST00000636853 CIAO1O76071 339 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 KCNJ4P48050 445 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 ADCK5Q3MIX3 580 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 DDX46Q7L014 1031 aaKnown RBP18.84■□□□□ 0.61
CLN3-251ENST00000636853 ZNF589Q86UQ0 364 aaPredicted RBP18.84■□□□□ 0.61
CLN3-251ENST00000636853 TTC14Q96N46 770 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 GPR108Q9NPR9 543 aa18.84■□□□□ 0.61
CLN3-251ENST00000636853 SLIT2O94813 1529 aa18.83■□□□□ 0.61
CLN3-251ENST00000636853 CASTP20810 708 aaKnown RBP18.83■□□□□ 0.61
CLN3-251ENST00000636853 IL6STP40189 918 aaPredicted RBP18.83■□□□□ 0.61
CLN3-251ENST00000636853 HSP90AB3PQ58FF7 597 aa18.83■□□□□ 0.61
CLN3-251ENST00000636853 MAP4K1Q92918 833 aa18.83■□□□□ 0.61
CLN3-251ENST00000636853 LARP6Q9BRS8 491 aaKnown RBP18.83■□□□□ 0.61
CLN3-251ENST00000636853 PLA2G12BQ9BX93 195 aa18.83■□□□□ 0.61
CLN3-251ENST00000636853 RTN4Q9NQC3 1192 aaKnown RBP18.83■□□□□ 0.61
CLN3-251ENST00000636853 SNRKQ9NRH2 765 aa18.83■□□□□ 0.61
CLN3-251ENST00000636853 NUP98P52948 1817 aa18.83■□□□□ 0.6
CLN3-251ENST00000636853 A0A1B0GUL7 405 aa18.83■□□□□ 0.6
CLN3-251ENST00000636853 BAG4O95429 457 aaKnown RBP18.83■□□□□ 0.6
CLN3-251ENST00000636853 JAKMIP1Q96N16 626 aaKnown RBP18.83■□□□□ 0.6
CLN3-251ENST00000636853 MED23Q9ULK4 1368 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 CSF1RP07333 972 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 ATP6V1AP38606 617 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 AK2P54819 239 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 TAF7LQ5H9L4 462 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 CREB3L3Q68CJ9 461 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 BRPF3Q9ULD4 1205 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 ZDHHC9Q9Y397 364 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 ZNF609O15014 1411 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 NWD2Q9ULI1 1742 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 ANKRD36CQ5JPF3 1778 aa18.82■□□□□ 0.6
CLN3-251ENST00000636853 CLEC17AQ6ZS10 378 aa18.81■□□□□ 0.6
CLN3-251ENST00000636853 BARGINQ6ZT62 677 aa18.81■□□□□ 0.6
CLN3-251ENST00000636853 KCNB2Q92953 911 aa18.81■□□□□ 0.6
CLN3-251ENST00000636853 CEP126Q9P2H0 1117 aa18.81■□□□□ 0.6
CLN3-251ENST00000636853 IFIT5Q13325 482 aaKnown RBP18.81■□□□□ 0.6
CLN3-251ENST00000636853 INTS5Q6P9B9 1019 aaKnown RBP18.81■□□□□ 0.6
CLN3-251ENST00000636853 TRMT112Q9UI30 125 aaKnown RBP18.81■□□□□ 0.6
CLN3-251ENST00000636853 CDHR2Q9BYE9 1310 aa18.81■□□□□ 0.6
CLN3-251ENST00000636853 UBAP1LF5GYI3 381 aa18.8■□□□□ 0.6
CLN3-251ENST00000636853 INTS4Q96HW7 963 aaKnown RBP18.8■□□□□ 0.6
CLN3-251ENST00000636853 SEC62Q99442 399 aaKnown RBP18.8■□□□□ 0.6
CLN3-251ENST00000636853 LOC102724428A0A0B4J2F2 783 aa18.8■□□□□ 0.6
CLN3-251ENST00000636853 GOLIM4O00461 696 aa18.8■□□□□ 0.6
CLN3-251ENST00000636853 SIK1P57059 783 aa18.8■□□□□ 0.6
CLN3-251ENST00000636853 FOXD4L5Q5VV16 416 aaPredicted RBP18.8■□□□□ 0.6
CLN3-251ENST00000636853 FOXD4L4Q8WXT5 416 aaPredicted RBP18.8■□□□□ 0.6
CLN3-251ENST00000636853 GREM2Q9H772 168 aa18.8■□□□□ 0.6
CLN3-251ENST00000636853 ERVV-1B6SEH8 477 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 IRS4O14654 1257 aaPredicted RBP18.79■□□□□ 0.6
CLN3-251ENST00000636853 SLC27A2O14975 620 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 KCNQ2O43526 872 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 ZKSCAN1P17029 563 aaPredicted RBP18.79■□□□□ 0.6
CLN3-251ENST00000636853 CRKLP46109 303 aaKnown RBP18.79■□□□□ 0.6
CLN3-251ENST00000636853 ITPK1Q13572 414 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 FAM98CQ17RN3 349 aaKnown RBP18.79■□□□□ 0.6
CLN3-251ENST00000636853 RUFY3Q7L099 469 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 TTLL11Q8NHH1 800 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 C8orf37Q96NL8 207 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 CCDC87Q9NVE4 849 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 UBN2Q6ZU65 1347 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 TAF5LO75529 589 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 EIF5P55010 431 aaKnown RBP18.79■□□□□ 0.6
CLN3-251ENST00000636853 CCDC129Q6ZRS4 1044 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 KBTBD3Q8NAB2 608 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 ZSWIM6Q9HCJ5 1215 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 PAG1Q9NWQ8 432 aa18.79■□□□□ 0.6
CLN3-251ENST00000636853 ITGA6P23229 1130 aa18.78■□□□□ 0.6
CLN3-251ENST00000636853 CTSWP56202 376 aa18.78■□□□□ 0.6
CLN3-251ENST00000636853 SLFNL1Q499Z3 407 aa18.78■□□□□ 0.6
CLN3-251ENST00000636853 MCTP1Q6DN14 999 aa18.78■□□□□ 0.6
CLN3-251ENST00000636853 FAM43AQ8N2R8 423 aa18.78■□□□□ 0.6
CLN3-251ENST00000636853 IFIT1P09914 478 aaKnown RBP18.77■□□□□ 0.6
CLN3-251ENST00000636853 ADORA1P30542 326 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 NGLY1Q96IV0 654 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 TM6SF1Q9BZW5 370 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 PDRG1Q9NUG6 133 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 LIMCH1Q9UPQ0 1083 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 CYP46A1Q9Y6A2 500 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 TAF6LQ9Y6J9 622 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 RFX7Q2KHR2 1363 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 GOLGA6L22H0YM25 854 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 COL9A3Q14050 684 aaPredicted RBP18.77■□□□□ 0.6
CLN3-251ENST00000636853 ZNF34Q8IZ26 560 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 FBXO3Q9UK99 471 aa18.77■□□□□ 0.6
CLN3-251ENST00000636853 PALLDQ8WX93 1383 aa18.77■□□□□ 0.59
CLN3-251ENST00000636853 MYH3P11055 1940 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 CHAMP1Q96JM3 812 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 JCADQ9P266 1359 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 MCMDC2Q4G0Z9 681 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 VPS53Q5VIR6 699 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 XAGE2Q96GT9 111 aa18.76■□□□□ 0.59
CLN3-251ENST00000636853 AKAP2Q9Y2D5 859 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms