RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF165P49910 485 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 COPS6Q7L5N1 327 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 CERS3Q8IU89 383 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 BCL2L12Q9HB09 334 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 UBE3BQ7Z3V4 1068 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 XAGE3Q8WTP9 111 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 MRVI1Q9Y6F6 885 aa18.04■□□□□ 0.48
UPF1-204ENST00000596842 FILIP1Q7Z7B0 1213 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 MAP4K1Q92918 833 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 GOLGA6L19H0YKK7 550 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 CSB-PGBD3P0DP91 1061 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 Q6ZUG5 572 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 RAB11FIP4Q86YS3 637 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 NPHP1O15259 732 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 EPHA10Q5JZY3 1008 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 ANKRD24Q8TF21 1146 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 PRIMPOLQ96LW4 560 aa18.03■□□□□ 0.48
UPF1-204ENST00000596842 RPS6KB1P23443 525 aa18.02■□□□□ 0.48
UPF1-204ENST00000596842 LINS1Q8NG48 757 aa18.02■□□□□ 0.48
UPF1-204ENST00000596842 LEO1Q8WVC0 666 aaPredicted RBP18.02■□□□□ 0.48
UPF1-204ENST00000596842 ORAI2Q96SN7 254 aa18.02■□□□□ 0.48
UPF1-204ENST00000596842 ZBTB22O15209 634 aa18.02■□□□□ 0.47
UPF1-204ENST00000596842 TFCP2Q12800 502 aa18.02■□□□□ 0.47
UPF1-204ENST00000596842 MTERF4Q7Z6M4 381 aaKnown RBP18.02■□□□□ 0.47
UPF1-204ENST00000596842 ZNF710Q8N1W2 664 aa18.02■□□□□ 0.47
UPF1-204ENST00000596842 BECN2A8MW95 431 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 TPD52L1Q16890 204 aaPredicted RBP18.01■□□□□ 0.47
UPF1-204ENST00000596842 PDCL2Q8N4E4 241 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 KIAA1524Q8TCG1 905 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 KAZALD1Q96I82 304 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 FMNL2Q96PY5 1086 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 FUCA2Q9BTY2 467 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 SCAND2PQ9GZW5 306 aaPredicted RBP18.01■□□□□ 0.47
UPF1-204ENST00000596842 HIP1O00291 1037 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 NFATC2IPQ8NCF5 419 aa18.01■□□□□ 0.47
UPF1-204ENST00000596842 ALDH1L1O75891 902 aa18■□□□□ 0.47
UPF1-204ENST00000596842 NEK1Q96PY6 1258 aa18■□□□□ 0.47
UPF1-204ENST00000596842 NCOA5Q9HCD5 579 aaKnown RBP18■□□□□ 0.47
UPF1-204ENST00000596842 CLIP2Q9UDT6 1046 aa18■□□□□ 0.47
UPF1-204ENST00000596842 HDAC5Q9UQL6 1122 aa18■□□□□ 0.47
UPF1-204ENST00000596842 U2AF2P26368 475 aaKnown RBP eCLIP18■□□□□ 0.47
UPF1-204ENST00000596842 TOB2Q14106 344 aaPredicted RBP18■□□□□ 0.47
UPF1-204ENST00000596842 ANKRD1Q15327 319 aa18■□□□□ 0.47
UPF1-204ENST00000596842 CCDC85AQ96PX6 553 aaPredicted RBP18■□□□□ 0.47
UPF1-204ENST00000596842 TM6SF1Q9BZW5 370 aa18■□□□□ 0.47
UPF1-204ENST00000596842 TRMT1Q9NXH9 659 aaKnown RBP18■□□□□ 0.47
UPF1-204ENST00000596842 NOL12Q9UGY1 213 aaKnown RBP eCLIP18■□□□□ 0.47
UPF1-204ENST00000596842 V9GYY5 206 aaPredicted RBP18■□□□□ 0.47
UPF1-204ENST00000596842 GCP02774 474 aa18■□□□□ 0.47
UPF1-204ENST00000596842 NAA30Q147X3 362 aaPredicted RBP18■□□□□ 0.47
UPF1-204ENST00000596842 DBNDD2Q9BQY9 259 aa18■□□□□ 0.47
UPF1-204ENST00000596842 CCDC94Q9BW85 323 aaPredicted RBP18■□□□□ 0.47
UPF1-204ENST00000596842 BABAM1Q9NWV8 329 aa17.99■□□□□ 0.47
UPF1-204ENST00000596842 PRDM4Q9UKN5 801 aa17.99■□□□□ 0.47
UPF1-204ENST00000596842 EPB41L2O43491 1005 aaKnown RBP17.99■□□□□ 0.47
UPF1-204ENST00000596842 RGPD8O14715 1765 aaPredicted RBP17.98■□□□□ 0.47
UPF1-204ENST00000596842 IGKV5-2P06315 115 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 ARID5BQ14865 1188 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 TNNT1P13805 278 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 AGLP35573 1532 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 ERICH4A6NGS2 130 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 GOLIM4O00461 696 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 ME1P48163 572 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 APOBRQ0VD83 1088 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 RAPGEF4Q8WZA2 1011 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 PGBD1Q96JS3 809 aa17.98■□□□□ 0.47
UPF1-204ENST00000596842 TAF7LQ5H9L4 462 aa17.97■□□□□ 0.47
UPF1-204ENST00000596842 DBNLQ9UJU6 430 aaKnown RBP17.97■□□□□ 0.47
UPF1-204ENST00000596842 SYTL4Q96C24 671 aaPredicted RBP17.97■□□□□ 0.47
UPF1-204ENST00000596842 AXIN2Q9Y2T1 843 aa17.97■□□□□ 0.47
UPF1-204ENST00000596842 A0A087WZG4 1122 aa17.97■□□□□ 0.47
UPF1-204ENST00000596842 ATP2B3Q16720 1220 aa17.97■□□□□ 0.47
UPF1-204ENST00000596842 NPHP3Q7Z494 1330 aa17.97■□□□□ 0.47
UPF1-204ENST00000596842 TAF5LO75529 589 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 ZRSR1Q15695 479 aaKnown RBP17.96■□□□□ 0.47
UPF1-204ENST00000596842 TTC5Q8N0Z6 440 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 DDX21Q9NR30 783 aaKnown RBP eCLIP17.96■□□□□ 0.47
UPF1-204ENST00000596842 USP16Q9Y5T5 823 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 HOXB7P09629 217 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 TIMM10P62072 90 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 OTUD7BQ6GQQ9 843 aa17.96■□□□□ 0.47
UPF1-204ENST00000596842 DIP2BQ9P265 1576 aa17.96■□□□□ 0.46
UPF1-204ENST00000596842 HAND2P61296 217 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 AMOTQ4VCS5 1084 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 HSP90AB3PQ58FF7 597 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 ISM2Q6H9L7 571 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 CCAR1Q8IX12 1150 aaKnown RBP17.95■□□□□ 0.46
UPF1-204ENST00000596842 SNRKQ9NRH2 765 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 DDX19AQ9NUU7 478 aaKnown RBP17.95■□□□□ 0.46
UPF1-204ENST00000596842 CEMIPQ8WUJ3 1361 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 A0A0G2JLW4 131 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 MTX1Q13505 466 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 CCDC73Q6ZRK6 1079 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 KCNH5Q8NCM2 988 aa17.95■□□□□ 0.46
UPF1-204ENST00000596842 CYP21A2P08686 494 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 SF3A1Q15459 793 aaKnown RBP17.94■□□□□ 0.46
UPF1-204ENST00000596842 ANKRD13DQ6ZTN6 518 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 SDF4Q9BRK5 362 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 NEURL1BA8MQ27 555 aa17.94■□□□□ 0.46
UPF1-204ENST00000596842 GCKRQ14397 625 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms