RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 TMX4Q9H1E5 349 aaPredicted RBP14.65□□□□□ -0.06
VPS4B-202ENST00000588059 PCDH10Q9P2E7 1040 aa14.65□□□□□ -0.06
VPS4B-202ENST00000588059 LRRC37AA6NMS7 1700 aa14.65□□□□□ -0.06
VPS4B-202ENST00000588059 TNRC18O15417 2968 aaPredicted RBP14.65□□□□□ -0.06
VPS4B-202ENST00000588059 ERBB4Q15303 1308 aa14.65□□□□□ -0.06
VPS4B-202ENST00000588059 KIAA2012Q0VF49 1180 aa14.64□□□□□ -0.07
VPS4B-202ENST00000588059 SLC10A5Q5PT55 438 aa14.64□□□□□ -0.07
VPS4B-202ENST00000588059 ZIC5Q96T25 663 aa14.64□□□□□ -0.07
VPS4B-202ENST00000588059 SHTN1A0MZ66 631 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 RAD17O75943 681 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 NOGQ13253 232 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 DPP8Q6V1X1 898 aaPredicted RBP14.63□□□□□ -0.07
VPS4B-202ENST00000588059 CDC37L1Q7L3B6 337 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 LRP10Q7Z4F1 713 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 THUMPD2Q9BTF0 503 aaKnown RBP14.63□□□□□ -0.07
VPS4B-202ENST00000588059 UTP14AQ9BVJ6 771 aaKnown RBP14.63□□□□□ -0.07
VPS4B-202ENST00000588059 BCL2L13Q9BXK5 485 aa14.63□□□□□ -0.07
VPS4B-202ENST00000588059 POLR2AP24928 1970 aaKnown RBP14.63□□□□□ -0.07
VPS4B-202ENST00000588059 YDJCA8MPS7 323 aa14.62□□□□□ -0.07
VPS4B-202ENST00000588059 TNIP1Q15025 636 aa14.62□□□□□ -0.07
VPS4B-202ENST00000588059 SP8Q8IXZ3 490 aa14.62□□□□□ -0.07
VPS4B-202ENST00000588059 MPNDQ8N594 471 aa14.62□□□□□ -0.07
VPS4B-202ENST00000588059 BBOX1O75936 387 aa14.61□□□□□ -0.07
VPS4B-202ENST00000588059 HUNKP57058 714 aa14.61□□□□□ -0.07
VPS4B-202ENST00000588059 CNOT7Q9UIV1 285 aaKnown RBP14.61□□□□□ -0.07
VPS4B-202ENST00000588059 AKAP11Q9UKA4 1901 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 PDIA6Q15084 440 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 PROSER3Q2NL68 480 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 DLK2Q6UY11 383 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 USP48Q86UV5 1035 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 MICALL2Q8IY33 904 aa14.6□□□□□ -0.07
VPS4B-202ENST00000588059 DDX60Q8IY21 1712 aaKnown RBP14.6□□□□□ -0.07
VPS4B-202ENST00000588059 FAM155AB1AL88 458 aaPredicted RBP14.59□□□□□ -0.07
VPS4B-202ENST00000588059 NEFMP07197 916 aa14.59□□□□□ -0.07
VPS4B-202ENST00000588059 GRAPQ13588 217 aa14.59□□□□□ -0.07
VPS4B-202ENST00000588059 NFE2L2Q16236 605 aa14.59□□□□□ -0.07
VPS4B-202ENST00000588059 GRAPLQ8TC17 118 aaPredicted RBP14.59□□□□□ -0.07
VPS4B-202ENST00000588059 PLEKHF1Q96S99 279 aa14.59□□□□□ -0.07
VPS4B-202ENST00000588059 H7C1D1 291 aa14.58□□□□□ -0.08
VPS4B-202ENST00000588059 ANXA1P04083 346 aa14.58□□□□□ -0.08
VPS4B-202ENST00000588059 HCLS1P14317 486 aaPredicted RBP14.58□□□□□ -0.08
VPS4B-202ENST00000588059 NLRP10Q86W26 655 aa14.58□□□□□ -0.08
VPS4B-202ENST00000588059 ZBTB12Q9Y330 459 aaPredicted RBP14.58□□□□□ -0.08
VPS4B-202ENST00000588059 EGFRP00533 1210 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 RGMBQ6NW40 437 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 DDX46Q7L014 1031 aaKnown RBP14.57□□□□□ -0.08
VPS4B-202ENST00000588059 SAMD7Q7Z3H4 446 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 DPF2Q92785 391 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 SAGE1Q9NXZ1 904 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 COL4A1P02462 1669 aa14.57□□□□□ -0.08
VPS4B-202ENST00000588059 PSMD14O00487 310 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 EIF2S2P20042 333 aaKnown RBP14.56□□□□□ -0.08
VPS4B-202ENST00000588059 SOX10P56693 466 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 TBC1D10BQ4KMP7 808 aaPredicted RBP14.56□□□□□ -0.08
VPS4B-202ENST00000588059 HSP90AB3PQ58FF7 597 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 KRT26Q7Z3Y9 468 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 GBA2Q9HCG7 927 aaPredicted RBP14.56□□□□□ -0.08
VPS4B-202ENST00000588059 TSPYL4Q9UJ04 414 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 SH3TC1Q8TE82 1336 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 SCN9AQ15858 1988 aa14.56□□□□□ -0.08
VPS4B-202ENST00000588059 ADM5C9JUS6 153 aa14.55□□□□□ -0.08
VPS4B-202ENST00000588059 KIF23Q02241 960 aaPredicted RBP14.55□□□□□ -0.08
VPS4B-202ENST00000588059 TMC4Q7Z404 712 aa14.55□□□□□ -0.08
VPS4B-202ENST00000588059 DBNDD1Q9H9R9 158 aa14.55□□□□□ -0.08
VPS4B-202ENST00000588059 TRMT112Q9UI30 125 aaKnown RBP14.55□□□□□ -0.08
VPS4B-202ENST00000588059 COPS6Q7L5N1 327 aa14.54□□□□□ -0.08
VPS4B-202ENST00000588059 C2orf69Q8N8R5 385 aa14.54□□□□□ -0.08
VPS4B-202ENST00000588059 XAGE3Q8WTP9 111 aa14.54□□□□□ -0.08
VPS4B-202ENST00000588059 CCDC102AQ96A19 550 aa14.54□□□□□ -0.08
VPS4B-202ENST00000588059 RNF186Q9NXI6 227 aa14.54□□□□□ -0.08
VPS4B-202ENST00000588059 RTL9Q8NET4 1388 aa14.53□□□□□ -0.08
VPS4B-202ENST00000588059 MAPK8IP3Q9UPT6 1336 aa14.53□□□□□ -0.08
VPS4B-202ENST00000588059 TRPA1O75762 1119 aa14.53□□□□□ -0.08
VPS4B-202ENST00000588059 RPS12P25398 132 aaKnown RBP14.53□□□□□ -0.08
VPS4B-202ENST00000588059 ZNF157P51786 506 aaPredicted RBP14.53□□□□□ -0.08
VPS4B-202ENST00000588059 TCIRG1Q13488 830 aa14.53□□□□□ -0.08
VPS4B-202ENST00000588059 WASHC4Q2M389 1173 aa14.53□□□□□ -0.08
VPS4B-202ENST00000588059 SLC10A3P09131 477 aa14.52□□□□□ -0.09
VPS4B-202ENST00000588059 AIMP1Q12904 312 aaKnown RBP14.52□□□□□ -0.09
VPS4B-202ENST00000588059 CELF1Q92879 486 aaKnown RBP14.52□□□□□ -0.09
VPS4B-202ENST00000588059 DCPSQ96C86 337 aaKnown RBP14.52□□□□□ -0.09
VPS4B-202ENST00000588059 PSME4Q14997 1843 aa14.52□□□□□ -0.09
VPS4B-202ENST00000588059 RIMBP2O15034 1052 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 ECE2O60344 883 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 KIF4BQ2VIQ3 1234 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 RBM26Q5T8P6 1007 aaKnown RBP14.51□□□□□ -0.09
VPS4B-202ENST00000588059 NECTIN2Q92692 538 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 ZNF428Q96B54 188 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 CSRNP1Q96S65 589 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 KCNQ5Q9NR82 932 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 GGA3Q9NZ52 723 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 POLLQ9UGP5 575 aa14.51□□□□□ -0.09
VPS4B-202ENST00000588059 NSFL1CQ9UNZ2 370 aaKnown RBP14.51□□□□□ -0.09
VPS4B-202ENST00000588059 PAPPA2Q9BXP8 1791 aa14.5□□□□□ -0.09
VPS4B-202ENST00000588059 ASTN2O75129 1339 aaPredicted RBP14.5□□□□□ -0.09
VPS4B-202ENST00000588059 C6orf229H3BNL8 230 aa14.5□□□□□ -0.09
VPS4B-202ENST00000588059 GPSM2P81274 684 aa14.5□□□□□ -0.09
VPS4B-202ENST00000588059 CTU1Q7Z7A3 348 aaKnown RBP14.5□□□□□ -0.09
VPS4B-202ENST00000588059 BABAM1Q9NWV8 329 aa14.5□□□□□ -0.09
VPS4B-202ENST00000588059 SF3B3Q15393 1217 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms