RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 USP50Q70EL3 339 aaPredicted RBP12.99□□□□□ -0.33
SS18-210ENST00000578700 ZNF408Q9H9D4 720 aa12.99□□□□□ -0.33
SS18-210ENST00000578700 TNRC18O15417 2968 aaPredicted RBP12.99□□□□□ -0.33
SS18-210ENST00000578700 THSD7BQ9C0I4 1608 aa12.99□□□□□ -0.33
SS18-210ENST00000578700 MAP3K15Q6ZN16 1313 aa12.98□□□□□ -0.33
SS18-210ENST00000578700 ERVV-1B6SEH8 477 aa12.98□□□□□ -0.33
SS18-210ENST00000578700 MLLT1Q03111 559 aaPredicted RBP12.98□□□□□ -0.33
SS18-210ENST00000578700 TRIM35Q9UPQ4 493 aa12.98□□□□□ -0.33
SS18-210ENST00000578700 SNED1Q8TER0 1413 aa12.97□□□□□ -0.33
SS18-210ENST00000578700 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
SS18-210ENST00000578700 CELF2O95319 508 aaKnown RBP12.97□□□□□ -0.33
SS18-210ENST00000578700 GNAI1P63096 354 aa12.97□□□□□ -0.33
SS18-210ENST00000578700 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
SS18-210ENST00000578700 TLL2Q9Y6L7 1015 aa12.97□□□□□ -0.33
SS18-210ENST00000578700 LTBP1Q14766 1721 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 UBN2Q6ZU65 1347 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 SLC34A2O95436 690 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 HOXA10P31260 410 aaPredicted RBP12.96□□□□□ -0.33
SS18-210ENST00000578700 GRIPAP1Q4V328 841 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 C3orf67Q6ZVT6 689 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 PPP1R42Q7Z4L9 355 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 NLRP3Q96P20 1036 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 CRAMP1Q96RY5 1269 aa12.96□□□□□ -0.33
SS18-210ENST00000578700 GLIS2Q9BZE0 524 aaPredicted RBP12.96□□□□□ -0.33
SS18-210ENST00000578700 ADARB2Q9NS39 739 aaKnown RBP12.96□□□□□ -0.33
SS18-210ENST00000578700 CXCL9Q07325 125 aa12.95□□□□□ -0.34
SS18-210ENST00000578700 PPP4R3CPQ6ZMV5 832 aa12.95□□□□□ -0.34
SS18-210ENST00000578700 THUMPD2Q9BTF0 503 aaKnown RBP12.95□□□□□ -0.34
SS18-210ENST00000578700 BCL2L13Q9BXK5 485 aa12.95□□□□□ -0.34
SS18-210ENST00000578700 GPRC5DQ9NZD1 345 aa12.95□□□□□ -0.34
SS18-210ENST00000578700 COL4A5P29400 1685 aa12.95□□□□□ -0.34
SS18-210ENST00000578700 FANCIQ9NVI1 1328 aa12.94□□□□□ -0.34
SS18-210ENST00000578700 DLG5Q8TDM6 1919 aa12.94□□□□□ -0.34
SS18-210ENST00000578700 EIF2S2P20042 333 aaKnown RBP12.94□□□□□ -0.34
SS18-210ENST00000578700 MAP2K2P36507 400 aa12.94□□□□□ -0.34
SS18-210ENST00000578700 GMPSP49915 693 aaPredicted RBP12.94□□□□□ -0.34
SS18-210ENST00000578700 EIF4A1P60842 406 aaKnown RBP12.94□□□□□ -0.34
SS18-210ENST00000578700 IFT57Q9NWB7 429 aa12.94□□□□□ -0.34
SS18-210ENST00000578700 ZNRF3Q9ULT6 936 aa12.94□□□□□ -0.34
SS18-210ENST00000578700 LAS1LQ9Y4W2 734 aaKnown RBP12.94□□□□□ -0.34
SS18-210ENST00000578700 RAD17O75943 681 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 NTSR2O95665 410 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 CIAPIN1Q6FI81 312 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 DPP8Q6V1X1 898 aaPredicted RBP12.93□□□□□ -0.34
SS18-210ENST00000578700 GIGYF2Q6Y7W6 1299 aaKnown RBP12.93□□□□□ -0.34
SS18-210ENST00000578700 SAPCD2Q86UD0 394 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 ZNF34Q8IZ26 560 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 SUPT20HQ8NEM7 779 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 ZNF428Q96B54 188 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 UTP14AQ9BVJ6 771 aaKnown RBP12.93□□□□□ -0.34
SS18-210ENST00000578700 MCOLN1Q9GZU1 580 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 ATP6V0A2Q9Y487 856 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 RIC1Q4ADV7 1423 aa12.93□□□□□ -0.34
SS18-210ENST00000578700 KDM3BQ7LBC6 1761 aa12.92□□□□□ -0.34
SS18-210ENST00000578700 MS4A1P11836 297 aa12.92□□□□□ -0.34
SS18-210ENST00000578700 DGKZQ13574 1117 aa12.92□□□□□ -0.34
SS18-210ENST00000578700 MPNDQ8N594 471 aa12.92□□□□□ -0.34
SS18-210ENST00000578700 TSR2Q969E8 191 aaKnown RBP12.92□□□□□ -0.34
SS18-210ENST00000578700 CASP8AP2Q9UKL3 1982 aa12.92□□□□□ -0.34
SS18-210ENST00000578700 ANXA1P04083 346 aa12.91□□□□□ -0.34
SS18-210ENST00000578700 HCLS1P14317 486 aaPredicted RBP12.91□□□□□ -0.34
SS18-210ENST00000578700 RGS19P49795 217 aa12.91□□□□□ -0.34
SS18-210ENST00000578700 HIRAP54198 1017 aaPredicted RBP12.91□□□□□ -0.34
SS18-210ENST00000578700 EXOSC9Q06265 439 aaKnown RBP12.91□□□□□ -0.34
SS18-210ENST00000578700 AIMP1Q12904 312 aaKnown RBP12.91□□□□□ -0.34
SS18-210ENST00000578700 PARP10Q53GL7 1025 aa12.91□□□□□ -0.34
SS18-210ENST00000578700 USP48Q86UV5 1035 aa12.91□□□□□ -0.34
SS18-210ENST00000578700 CCDC136Q96JN2 1154 aa12.91□□□□□ -0.34
SS18-210ENST00000578700 ABCC4O15439 1325 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 PDE4DIPQ5VU43 2346 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 SHTN1A0MZ66 631 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 H7C1D1 291 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 CA12O43570 354 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 PLIN1O60240 522 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 RARSP54136 660 aaKnown RBP12.9□□□□□ -0.34
SS18-210ENST00000578700 TNIP1Q15025 636 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 DLK2Q6UY11 383 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 CDC37L1Q7L3B6 337 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 TRPM4Q8TD43 1214 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 NECTIN2Q92692 538 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 VPS33BQ9H267 617 aa12.9□□□□□ -0.34
SS18-210ENST00000578700 CNOT7Q9UIV1 285 aaKnown RBP12.9□□□□□ -0.34
SS18-210ENST00000578700 IBTKQ9P2D0 1353 aaPredicted RBP12.9□□□□□ -0.34
SS18-210ENST00000578700 BBOX1O75936 387 aa12.89□□□□□ -0.35
SS18-210ENST00000578700 BRPF1P55201 1214 aaPredicted RBP12.89□□□□□ -0.35
SS18-210ENST00000578700 RBM26Q5T8P6 1007 aaKnown RBP12.89□□□□□ -0.35
SS18-210ENST00000578700 DDX46Q7L014 1031 aaKnown RBP12.89□□□□□ -0.35
SS18-210ENST00000578700 SP8Q8IXZ3 490 aa12.89□□□□□ -0.35
SS18-210ENST00000578700 FRAT1Q92837 279 aaPredicted RBP12.89□□□□□ -0.35
SS18-210ENST00000578700 ZIC5Q96T25 663 aa12.89□□□□□ -0.35
SS18-210ENST00000578700 TSPYL4Q9UJ04 414 aa12.89□□□□□ -0.35
SS18-210ENST00000578700 ZBTB12Q9Y330 459 aaPredicted RBP12.89□□□□□ -0.35
SS18-210ENST00000578700 BCAR3O75815 825 aa12.88□□□□□ -0.35
SS18-210ENST00000578700 HUNKP57058 714 aa12.88□□□□□ -0.35
SS18-210ENST00000578700 PDE3AQ14432 1141 aa12.88□□□□□ -0.35
SS18-210ENST00000578700 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
SS18-210ENST00000578700 RTFDC1Q9BY42 306 aaPredicted RBP12.88□□□□□ -0.35
SS18-210ENST00000578700 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
SS18-210ENST00000578700 LAMB2P55268 1798 aa12.87□□□□□ -0.35
SS18-210ENST00000578700 ANKRD36CQ5JPF3 1778 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms