RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 TTLL7Q6ZT98 887 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 RBM17Q96I25 401 aaKnown RBP18.36■□□□□ 0.53
CIITA-211ENST00000576601 VPS33BQ9H267 617 aa18.36■□□□□ 0.53
CIITA-211ENST00000576601 ABCC4O15439 1325 aa18.35■□□□□ 0.53
CIITA-211ENST00000576601 YDJCA8MPS7 323 aa18.35■□□□□ 0.53
CIITA-211ENST00000576601 RAD17O75943 681 aa18.35■□□□□ 0.53
CIITA-211ENST00000576601 RNF186Q9NXI6 227 aa18.35■□□□□ 0.53
CIITA-211ENST00000576601 KIAA0100Q14667 2235 aaKnown RBP18.34■□□□□ 0.53
CIITA-211ENST00000576601 DCTN1Q14203 1278 aa18.34■□□□□ 0.53
CIITA-211ENST00000576601 RGMBQ6NW40 437 aa18.34■□□□□ 0.53
CIITA-211ENST00000576601 USP48Q86UV5 1035 aa18.34■□□□□ 0.53
CIITA-211ENST00000576601 COL4A1P02462 1669 aa18.34■□□□□ 0.53
CIITA-211ENST00000576601 TRPA1O75762 1119 aa18.33■□□□□ 0.52
CIITA-211ENST00000576601 EGFRP00533 1210 aa18.33■□□□□ 0.52
CIITA-211ENST00000576601 KIF23Q02241 960 aaPredicted RBP18.33■□□□□ 0.52
CIITA-211ENST00000576601 KIAA2012Q0VF49 1180 aa18.33■□□□□ 0.52
CIITA-211ENST00000576601 ZNF34Q8IZ26 560 aa18.33■□□□□ 0.52
CIITA-211ENST00000576601 CFAP53Q96M91 514 aa18.33■□□□□ 0.52
CIITA-211ENST00000576601 RBBP6Q7Z6E9 1792 aaKnown RBP18.32■□□□□ 0.52
CIITA-211ENST00000576601 CTU1Q7Z7A3 348 aaKnown RBP18.32■□□□□ 0.52
CIITA-211ENST00000576601 NGEFQ8N5V2 710 aa18.32■□□□□ 0.52
CIITA-211ENST00000576601 CNOT7Q9UIV1 285 aaKnown RBP18.32■□□□□ 0.52
CIITA-211ENST00000576601 MICALL2Q8IY33 904 aa18.31■□□□□ 0.52
CIITA-211ENST00000576601 BCL2L13Q9BXK5 485 aa18.31■□□□□ 0.52
CIITA-211ENST00000576601 ZBTB3Q9H5J0 574 aa18.31■□□□□ 0.52
CIITA-211ENST00000576601 GBA2Q9HCG7 927 aaPredicted RBP18.31■□□□□ 0.52
CIITA-211ENST00000576601 HPS5Q9UPZ3 1129 aa18.31■□□□□ 0.52
CIITA-211ENST00000576601 COL6A3P12111 3177 aa18.31■□□□□ 0.52
CIITA-211ENST00000576601 PAPPA2Q9BXP8 1791 aa18.3■□□□□ 0.52
CIITA-211ENST00000576601 ADM5C9JUS6 153 aa18.3■□□□□ 0.52
CIITA-211ENST00000576601 SLC10A3P09131 477 aa18.3■□□□□ 0.52
CIITA-211ENST00000576601 U2AF1L5P0DN76 240 aaPredicted RBP18.3■□□□□ 0.52
CIITA-211ENST00000576601 U2AF1Q01081 240 aaKnown RBP eCLIP18.3■□□□□ 0.52
CIITA-211ENST00000576601 CSRNP1Q96S65 589 aa18.3■□□□□ 0.52
CIITA-211ENST00000576601 DPP8Q6V1X1 898 aaPredicted RBP18.29■□□□□ 0.52
CIITA-211ENST00000576601 SAMD7Q7Z3H4 446 aa18.29■□□□□ 0.52
CIITA-211ENST00000576601 KRT26Q7Z3Y9 468 aa18.29■□□□□ 0.52
CIITA-211ENST00000576601 SUPT20HQ8NEM7 779 aa18.29■□□□□ 0.52
CIITA-211ENST00000576601 MIS18AQ9NYP9 233 aa18.29■□□□□ 0.52
CIITA-211ENST00000576601 ZBTB12Q9Y330 459 aaPredicted RBP18.29■□□□□ 0.52
CIITA-211ENST00000576601 ZNF157P51786 506 aaPredicted RBP18.28■□□□□ 0.52
CIITA-211ENST00000576601 TNIP1Q15025 636 aa18.28■□□□□ 0.52
CIITA-211ENST00000576601 KIF6Q6ZMV9 814 aa18.28■□□□□ 0.52
CIITA-211ENST00000576601 CCDC102AQ96A19 550 aa18.28■□□□□ 0.52
CIITA-211ENST00000576601 TRIOBPQ9H2D6 2365 aa18.28■□□□□ 0.52
CIITA-211ENST00000576601 GIGYF2Q6Y7W6 1299 aaKnown RBP18.27■□□□□ 0.52
CIITA-211ENST00000576601 RTF1Q92541 710 aaKnown RBP18.27■□□□□ 0.52
CIITA-211ENST00000576601 ZNF646O15015 1829 aaPredicted RBP18.27■□□□□ 0.52
CIITA-211ENST00000576601 H7C1D1 291 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 MYL6BP14649 208 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 TBC1D10BQ4KMP7 808 aaPredicted RBP18.26■□□□□ 0.51
CIITA-211ENST00000576601 SLC10A5Q5PT55 438 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 LRP10Q7Z4F1 713 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 SP8Q8IXZ3 490 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 MPNDQ8N594 471 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 NLRP3Q96P20 1036 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 NUDCQ9Y266 331 aa18.26■□□□□ 0.51
CIITA-211ENST00000576601 LAMB1P07942 1786 aa18.25■□□□□ 0.51
CIITA-211ENST00000576601 PSMD14O00487 310 aa18.25■□□□□ 0.51
CIITA-211ENST00000576601 TAF7Q15545 349 aaPredicted RBP18.25■□□□□ 0.51
CIITA-211ENST00000576601 C2orf69Q8N8R5 385 aa18.25■□□□□ 0.51
CIITA-211ENST00000576601 DPF2Q92785 391 aa18.25■□□□□ 0.51
CIITA-211ENST00000576601 RRP7AQ9Y3A4 280 aaKnown RBP18.25■□□□□ 0.51
CIITA-211ENST00000576601 RTL9Q8NET4 1388 aa18.25■□□□□ 0.51
CIITA-211ENST00000576601 RASAL3Q86YV0 1011 aa18.24■□□□□ 0.51
CIITA-211ENST00000576601 ASTN2O75129 1339 aaPredicted RBP18.23■□□□□ 0.51
CIITA-211ENST00000576601 HTATSF1O43719 755 aaKnown RBP18.23■□□□□ 0.51
CIITA-211ENST00000576601 BBOX1O75936 387 aa18.23■□□□□ 0.51
CIITA-211ENST00000576601 PARP10Q53GL7 1025 aa18.23■□□□□ 0.51
CIITA-211ENST00000576601 PPP1R42Q7Z4L9 355 aa18.23■□□□□ 0.51
CIITA-211ENST00000576601 TMX4Q9H1E5 349 aaPredicted RBP18.23■□□□□ 0.51
CIITA-211ENST00000576601 CUL9Q8IWT3 2517 aa18.22■□□□□ 0.51
CIITA-211ENST00000576601 EIF4A1P60842 406 aaKnown RBP18.22■□□□□ 0.51
CIITA-211ENST00000576601 LAMA3Q16787 3333 aa18.21■□□□□ 0.51
CIITA-211ENST00000576601 UTP14AQ9BVJ6 771 aaKnown RBP18.21■□□□□ 0.51
CIITA-211ENST00000576601 KCNQ5Q9NR82 932 aa18.21■□□□□ 0.51
CIITA-211ENST00000576601 GGA3Q9NZ52 723 aa18.21■□□□□ 0.51
CIITA-211ENST00000576601 HCLS1P14317 486 aaPredicted RBP18.2■□□□□ 0.5
CIITA-211ENST00000576601 GRAPQ13588 217 aa18.2■□□□□ 0.5
CIITA-211ENST00000576601 HABP4Q5JVS0 413 aaKnown RBP18.2■□□□□ 0.5
CIITA-211ENST00000576601 GRAPLQ8TC17 118 aaPredicted RBP18.2■□□□□ 0.5
CIITA-211ENST00000576601 ZNF296Q8WUU4 475 aaPredicted RBP18.2■□□□□ 0.5
CIITA-211ENST00000576601 DCPSQ96C86 337 aaKnown RBP18.2■□□□□ 0.5
CIITA-211ENST00000576601 CDCA5Q96FF9 252 aa18.2■□□□□ 0.5
CIITA-211ENST00000576601 DBNDD1Q9H9R9 158 aa18.2■□□□□ 0.5
CIITA-211ENST00000576601 ZNF609O15014 1411 aa18.19■□□□□ 0.5
CIITA-211ENST00000576601 PDIA6Q15084 440 aa18.19■□□□□ 0.5
CIITA-211ENST00000576601 PKN2Q16513 984 aaKnown RBP18.19■□□□□ 0.5
CIITA-211ENST00000576601 GCC1Q96CN9 775 aa18.19■□□□□ 0.5
CIITA-211ENST00000576601 THUMPD2Q9BTF0 503 aaKnown RBP18.19■□□□□ 0.5
CIITA-211ENST00000576601 ERBB4Q15303 1308 aa18.19■□□□□ 0.5
CIITA-211ENST00000576601 RPS12P25398 132 aaKnown RBP18.18■□□□□ 0.5
CIITA-211ENST00000576601 KIF4BQ2VIQ3 1234 aa18.18■□□□□ 0.5
CIITA-211ENST00000576601 PLEKHF1Q96S99 279 aa18.18■□□□□ 0.5
CIITA-211ENST00000576601 PROSER3Q2NL68 480 aa18.17■□□□□ 0.5
CIITA-211ENST00000576601 RBM26Q5T8P6 1007 aaKnown RBP18.17■□□□□ 0.5
CIITA-211ENST00000576601 NLRP10Q86W26 655 aa18.17■□□□□ 0.5
CIITA-211ENST00000576601 TBC1D8O95759 1140 aa18.16■□□□□ 0.5
CIITA-211ENST00000576601 REM2Q8IYK8 340 aaPredicted RBP18.16■□□□□ 0.5
CIITA-211ENST00000576601 ECE2O60344 883 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms