RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 EAF2Q96CJ1 260 aaPredicted RBP14.47□□□□□ -0.09
CIITA-209ENST00000573309 TIMM10P62072 90 aa14.47□□□□□ -0.09
CIITA-209ENST00000573309 PUS3Q9BZE2 481 aaKnown RBP14.47□□□□□ -0.09
CIITA-209ENST00000573309 SNAP23O00161 211 aa14.47□□□□□ -0.09
CIITA-209ENST00000573309 SASH1O94885 1247 aa14.47□□□□□ -0.09
CIITA-209ENST00000573309 TFCP2Q12800 502 aa14.47□□□□□ -0.09
CIITA-209ENST00000573309 TAOK2Q9UL54 1235 aa14.47□□□□□ -0.09
CIITA-209ENST00000573309 PHRF1Q9P1Y6 1649 aaKnown RBP14.46□□□□□ -0.09
CIITA-209ENST00000573309 ADCY5O95622 1261 aa14.46□□□□□ -0.09
CIITA-209ENST00000573309 IGSF3O75054 1194 aa14.46□□□□□ -0.1
CIITA-209ENST00000573309 KIF1BPQ96EK5 621 aa14.46□□□□□ -0.1
CIITA-209ENST00000573309 SNRKQ9NRH2 765 aa14.46□□□□□ -0.1
CIITA-209ENST00000573309 KIF3AQ9Y496 699 aa14.46□□□□□ -0.1
CIITA-209ENST00000573309 LRRC24Q50LG9 513 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 LRP10Q7Z4F1 713 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 USP48Q86UV5 1035 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 HELBQ8NG08 1087 aaPredicted RBP14.45□□□□□ -0.1
CIITA-209ENST00000573309 CPA1P15085 419 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 GTPBP4Q9BZE4 634 aaKnown RBP14.45□□□□□ -0.1
CIITA-209ENST00000573309 ALDH1L1O75891 902 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 HSPA1LP34931 641 aa14.45□□□□□ -0.1
CIITA-209ENST00000573309 HCLS1P14317 486 aaPredicted RBP14.44□□□□□ -0.1
CIITA-209ENST00000573309 TAF7LQ5H9L4 462 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 PLBD2Q8NHP8 589 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 PALD1Q9ULE6 856 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 NCAPD2Q15021 1401 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 STARD3NLO95772 234 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 FGD1P98174 961 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 SPTLC3Q9NUV7 552 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 ROBO1Q9Y6N7 1651 aa14.44□□□□□ -0.1
CIITA-209ENST00000573309 CWC25Q9NXE8 425 aaPredicted RBP14.43□□□□□ -0.1
CIITA-209ENST00000573309 USP21Q9UK80 565 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 PHF14O94880 888 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 CUL4AQ13619 759 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 POLA2Q14181 598 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 HSP90AB3PQ58FF7 597 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 KIF6Q6ZMV9 814 aa14.43□□□□□ -0.1
CIITA-209ENST00000573309 SYAP1Q96A49 352 aaPredicted RBP14.43□□□□□ -0.1
CIITA-209ENST00000573309 U2AF2P26368 475 aaKnown RBP eCLIP14.42□□□□□ -0.1
CIITA-209ENST00000573309 COL18A1P39060 1754 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 AP5Z1O43299 807 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 DBNDD2Q9BQY9 259 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 CHMP4AQ9BY43 222 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 TRMT112Q9UI30 125 aaKnown RBP14.42□□□□□ -0.1
CIITA-209ENST00000573309 SPATA31A1Q5TZJ5 1347 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 DDX46Q7L014 1031 aaKnown RBP14.42□□□□□ -0.1
CIITA-209ENST00000573309 PDCL2Q8N4E4 241 aa14.42□□□□□ -0.1
CIITA-209ENST00000573309 RIOK3O14730 519 aaKnown RBP14.41□□□□□ -0.1
CIITA-209ENST00000573309 UVSSAQ2YD98 709 aa14.41□□□□□ -0.1
CIITA-209ENST00000573309 DZIP3Q86Y13 1208 aaKnown RBP14.41□□□□□ -0.1
CIITA-209ENST00000573309 TCEANC2Q96MN5 208 aa14.41□□□□□ -0.1
CIITA-209ENST00000573309 PYCARDQ9ULZ3 195 aa14.41□□□□□ -0.1
CIITA-209ENST00000573309 FAM227BQ96M60 508 aa14.41□□□□□ -0.1
CIITA-209ENST00000573309 KIF20AO95235 890 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 MCCP23508 829 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 KCNJ4P48050 445 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 ITPK1Q13572 414 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 ESYT1Q9BSJ8 1104 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 KCNF1Q9H3M0 494 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 CHMLP26374 656 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 FAM208AQ9UK61 1670 aaKnown RBP14.4□□□□□ -0.1
CIITA-209ENST00000573309 PLCB2Q00722 1185 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 PTPN12Q05209 780 aaKnown RBP14.4□□□□□ -0.1
CIITA-209ENST00000573309 LRRC37A3O60309 1634 aa14.4□□□□□ -0.1
CIITA-209ENST00000573309 LETM1O95202 739 aaPredicted RBP14.39□□□□□ -0.11
CIITA-209ENST00000573309 NKX1-1Q15270 411 aaPredicted RBP14.39□□□□□ -0.11
CIITA-209ENST00000573309 PI4K2BQ8TCG2 481 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 FSD1Q9BTV5 496 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 DIAPH3Q9NSV4 1193 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 CCDC129Q6ZRS4 1044 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 FAM184AQ8NB25 1140 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 LOC102724428A0A0B4J2F2 783 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 PPFIA3O75145 1194 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 CYP19A1P11511 503 aaPredicted RBP14.39□□□□□ -0.11
CIITA-209ENST00000573309 SIK1P57059 783 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 PI16Q6UXB8 463 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 SEC62Q99442 399 aaKnown RBP14.39□□□□□ -0.11
CIITA-209ENST00000573309 CNPY2Q9Y2B0 182 aa14.39□□□□□ -0.11
CIITA-209ENST00000573309 KDM4AO75164 1064 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 GORABQ5T7V8 394 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 ANKRD7Q92527 254 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 NPHP1O15259 732 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 CRKLP46109 303 aaKnown RBP14.38□□□□□ -0.11
CIITA-209ENST00000573309 FKBP4Q02790 459 aaKnown RBP eCLIP14.38□□□□□ -0.11
CIITA-209ENST00000573309 KIAA1524Q8TCG1 905 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 ECHDC1Q9NTX5 307 aa14.38□□□□□ -0.11
CIITA-209ENST00000573309 IQSEC3Q9UPP2 1182 aaPredicted RBP14.38□□□□□ -0.11
CIITA-209ENST00000573309 DBNLQ9UJU6 430 aaKnown RBP14.37□□□□□ -0.11
CIITA-209ENST00000573309 LMO7Q8WWI1 1683 aa14.37□□□□□ -0.11
CIITA-209ENST00000573309 RAB11FIP3O75154 756 aa14.37□□□□□ -0.11
CIITA-209ENST00000573309 COL9A3Q14050 684 aaPredicted RBP14.37□□□□□ -0.11
CIITA-209ENST00000573309 CCDC57Q2TAC2 916 aa14.37□□□□□ -0.11
CIITA-209ENST00000573309 CCDC183Q5T5S1 534 aa14.37□□□□□ -0.11
CIITA-209ENST00000573309 INTS4Q96HW7 963 aaKnown RBP14.37□□□□□ -0.11
CIITA-209ENST00000573309 TCHHQ07283 1943 aa14.37□□□□□ -0.11
CIITA-209ENST00000573309 GTF2E1P29083 439 aaPredicted RBP14.36□□□□□ -0.11
CIITA-209ENST00000573309 MCM2P49736 904 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 TCIRG1Q13488 830 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 SPC24Q8NBT2 197 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 GREM2Q9H772 168 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms