RNA–Protein interactions for RNA: ENST00000568038.1

SMG1-214, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 1,210 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-214ENST00000568038 KIAA0232Q92628 1395 aa10.39□□□□□ -0.75
SMG1-214ENST00000568038 NFAT5O94916 1531 aa10.38□□□□□ -0.75
SMG1-214ENST00000568038 MAP2P11137 1827 aaKnown RBP10.38□□□□□ -0.75
SMG1-214ENST00000568038 COL22A1Q8NFW1 1626 aaPredicted RBP10.38□□□□□ -0.75
SMG1-214ENST00000568038 PHRF1Q9P1Y6 1649 aaKnown RBP10.38□□□□□ -0.75
SMG1-214ENST00000568038 USP17L8P0C7I0 530 aa10.38□□□□□ -0.75
SMG1-214ENST00000568038 LCE2AQ5TA79 106 aaPredicted RBP10.38□□□□□ -0.75
SMG1-214ENST00000568038 SHPRHQ149N8 1683 aa10.38□□□□□ -0.75
SMG1-214ENST00000568038 SPATA31A6Q5VVP1 1343 aa10.37□□□□□ -0.75
SMG1-214ENST00000568038 FAM83GA6ND36 823 aa10.37□□□□□ -0.75
SMG1-214ENST00000568038 TPRNQ4KMQ1 711 aa10.37□□□□□ -0.75
SMG1-214ENST00000568038 CCDC184Q52MB2 194 aa10.37□□□□□ -0.75
SMG1-214ENST00000568038 TRMT44Q8IYL2 757 aaKnown RBP10.37□□□□□ -0.75
SMG1-214ENST00000568038 HMX1Q9NP08 348 aaPredicted RBP10.37□□□□□ -0.75
SMG1-214ENST00000568038 CRYBG1Q9Y4K1 1723 aa10.37□□□□□ -0.75
SMG1-214ENST00000568038 ABCA3Q99758 1704 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 HOXC9P31274 260 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 HSP90AB2PQ58FF8 381 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 MEX3CQ5U5Q3 659 aaKnown RBP10.36□□□□□ -0.75
SMG1-214ENST00000568038 IP6K1Q92551 441 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 LTV1Q96GA3 475 aaPredicted RBP10.36□□□□□ -0.75
SMG1-214ENST00000568038 CFAP53Q96M91 514 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 CPDO75976 1380 aa10.36□□□□□ -0.75
SMG1-214ENST00000568038 SOBPA7XYQ1 873 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 VEGFBP49765 207 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 SLC10A4Q96EP9 437 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 MRS2Q9HD23 443 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 MAP4K5Q9Y4K4 846 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 FLT4P35916 1363 aa10.35□□□□□ -0.75
SMG1-214ENST00000568038 LTN1O94822 1766 aa10.34□□□□□ -0.75
SMG1-214ENST00000568038 PEAK1Q9H792 1746 aa10.34□□□□□ -0.75
SMG1-214ENST00000568038 BRPF1P55201 1214 aaPredicted RBP10.34□□□□□ -0.75
SMG1-214ENST00000568038 PTK2Q05397 1052 aa10.34□□□□□ -0.75
SMG1-214ENST00000568038 CCDC116Q8IYX3 515 aa10.34□□□□□ -0.75
SMG1-214ENST00000568038 C8orf37Q96NL8 207 aa10.34□□□□□ -0.75
SMG1-214ENST00000568038 NXF1Q9UBU9 619 aaKnown RBP10.34□□□□□ -0.75
SMG1-214ENST00000568038 SMG6Q86US8 1419 aaKnown RBP10.33□□□□□ -0.76
SMG1-214ENST00000568038 LRP6O75581 1613 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 CCER2I3L3R5 266 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 DIAPH1O60610 1272 aaKnown RBP10.33□□□□□ -0.76
SMG1-214ENST00000568038 UPP2O95045 317 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 BMP2P12643 396 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 PNMA1Q8ND90 353 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 NGLY1Q96IV0 654 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 KCTD15Q96SI1 283 aaPredicted RBP10.33□□□□□ -0.76
SMG1-214ENST00000568038 STRN4Q9NRL3 753 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 BTG4Q9NY30 223 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 RTL1A6NKG5 1358 aa10.33□□□□□ -0.76
SMG1-214ENST00000568038 CDK12Q9NYV4 1490 aaPredicted RBP10.33□□□□□ -0.76
SMG1-214ENST00000568038 ZC3H4Q9UPT8 1303 aaKnown RBP10.33□□□□□ -0.76
SMG1-214ENST00000568038 INSRP06213 1382 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 KIF24Q5T7B8 1368 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 U2SURPO15042 1029 aaKnown RBP10.32□□□□□ -0.76
SMG1-214ENST00000568038 CSB-PGBD3P0DP91 1061 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 EVA1CP58658 441 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 EIF4A2Q14240 407 aaKnown RBP10.32□□□□□ -0.76
SMG1-214ENST00000568038 ANKRD24Q8TF21 1146 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 SLC16A10Q8TF71 515 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 GOPCQ9HD26 462 aa10.32□□□□□ -0.76
SMG1-214ENST00000568038 COL18A1P39060 1754 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 IL13P35225 146 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 ADAM32Q8TC27 787 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 NUDCQ9Y266 331 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 RGPD5Q99666 1765 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 BLMP54132 1417 aaPredicted RBP10.31□□□□□ -0.76
SMG1-214ENST00000568038 CAMTA1Q9Y6Y1 1673 aa10.31□□□□□ -0.76
SMG1-214ENST00000568038 RAB15P59190 212 aa10.3□□□□□ -0.76
SMG1-214ENST00000568038 TMEM259Q4ZIN3 620 aa10.3□□□□□ -0.76
SMG1-214ENST00000568038 PPP1R26Q5T8A7 1209 aaPredicted RBP10.3□□□□□ -0.76
SMG1-214ENST00000568038 FAM9BQ8IZU0 186 aa10.3□□□□□ -0.76
SMG1-214ENST00000568038 OCSTAMPQ9BR26 566 aa10.3□□□□□ -0.76
SMG1-214ENST00000568038 NLRP2Q9NX02 1062 aa10.3□□□□□ -0.76
SMG1-214ENST00000568038 COL3A1P02461 1466 aaPredicted RBP10.3□□□□□ -0.76
SMG1-214ENST00000568038 COL14A1Q05707 1796 aaKnown RBP10.29□□□□□ -0.76
SMG1-214ENST00000568038 MAN1A2O60476 641 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 U2AF1L5P0DN76 240 aaPredicted RBP10.29□□□□□ -0.76
SMG1-214ENST00000568038 U2AF1Q01081 240 aaKnown RBP eCLIP10.29□□□□□ -0.76
SMG1-214ENST00000568038 CBLBQ13191 982 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 WDR43Q15061 677 aaKnown RBP eCLIP10.29□□□□□ -0.76
SMG1-214ENST00000568038 LCE2CQ5TA81 110 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 LARP1Q6PKG0 1096 aaKnown RBP10.29□□□□□ -0.76
SMG1-214ENST00000568038 TOM1L2Q6ZVM7 507 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 LINC00528Q8N1L1 170 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 MEIOBQ8N635 442 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 USHBP1Q8N6Y0 703 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 PGPEP1Q9NXJ5 209 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 AFF2P51816 1311 aa10.29□□□□□ -0.76
SMG1-214ENST00000568038 LMO7Q8WWI1 1683 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 ABCC6O95255 1503 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 NBPF6Q5VWK0 638 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 UNC5CLQ8IV45 518 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 PNISRQ8TF01 805 aaKnown RBP10.28□□□□□ -0.76
SMG1-214ENST00000568038 NBPF4Q96M43 638 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 USP21Q9UK80 565 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 CDV3Q9UKY7 258 aaKnown RBP10.28□□□□□ -0.76
SMG1-214ENST00000568038 CCDC9Q9Y3X0 531 aaKnown RBP10.28□□□□□ -0.76
SMG1-214ENST00000568038 COL5A2P05997 1499 aaPredicted RBP10.28□□□□□ -0.76
SMG1-214ENST00000568038 WDR17Q8IZU2 1322 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 SLIT2O94813 1529 aa10.28□□□□□ -0.76
SMG1-214ENST00000568038 HMOX1P09601 288 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms