RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 KIF7Q2M1P5 1343 aa18.06■□□□□ 0.48
TMEM260-215ENST00000557626 RIC1Q4ADV7 1423 aa18.06■□□□□ 0.48
TMEM260-215ENST00000557626 EGFRP00533 1210 aa18.05■□□□□ 0.48
TMEM260-215ENST00000557626 HOXA10P31260 410 aaPredicted RBP18.05■□□□□ 0.48
TMEM260-215ENST00000557626 FKBP1BP68106 108 aa18.05■□□□□ 0.48
TMEM260-215ENST00000557626 PTPN22Q9Y2R2 807 aa18.05■□□□□ 0.48
TMEM260-215ENST00000557626 PRAMEF22A3QJZ6 481 aa18.04■□□□□ 0.48
TMEM260-215ENST00000557626 SREBF2Q12772 1141 aa18.04■□□□□ 0.48
TMEM260-215ENST00000557626 RBM26Q5T8P6 1007 aaKnown RBP18.04■□□□□ 0.48
TMEM260-215ENST00000557626 DPF2Q92785 391 aa18.04■□□□□ 0.48
TMEM260-215ENST00000557626 RBM17Q96I25 401 aaKnown RBP18.04■□□□□ 0.48
TMEM260-215ENST00000557626 ZBTB12Q9Y330 459 aaPredicted RBP18.04■□□□□ 0.48
TMEM260-215ENST00000557626 PIP4K2AP48426 406 aaPredicted RBP18.03■□□□□ 0.48
TMEM260-215ENST00000557626 CRAMP1Q96RY5 1269 aa18.03■□□□□ 0.48
TMEM260-215ENST00000557626 GGA3Q9NZ52 723 aa18.03■□□□□ 0.48
TMEM260-215ENST00000557626 KIAA2012Q0VF49 1180 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 ZNF790Q6PG37 636 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 NUTM1Q86Y26 1132 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 LRCH3Q96II8 777 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 RTFDC1Q9BY42 306 aaPredicted RBP18.02■□□□□ 0.48
TMEM260-215ENST00000557626 NYXQ9GZU5 481 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 PRDM6Q9NQX0 595 aa18.02■□□□□ 0.48
TMEM260-215ENST00000557626 SPTBN5Q9NRC6 3674 aaKnown RBP18.02■□□□□ 0.47
TMEM260-215ENST00000557626 SOX1O00570 391 aaPredicted RBP18.01■□□□□ 0.47
TMEM260-215ENST00000557626 MKRN3Q13064 507 aaKnown RBP18.01■□□□□ 0.47
TMEM260-215ENST00000557626 PRO3102Q9H379 93 aa18.01■□□□□ 0.47
TMEM260-215ENST00000557626 YDJCA8MPS7 323 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 RGL2O15211 777 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 SLC4A8Q2Y0W8 1093 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 CDCA8Q53HL2 280 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 DPF3Q92784 378 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 ZNF333Q96JL9 665 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 FMNL2Q96PY5 1086 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 ATP6V0A2Q9Y487 856 aa18■□□□□ 0.47
TMEM260-215ENST00000557626 KIF4BQ2VIQ3 1234 aa17.99■□□□□ 0.47
TMEM260-215ENST00000557626 DPP8Q6V1X1 898 aaPredicted RBP17.99■□□□□ 0.47
TMEM260-215ENST00000557626 ZNF609O15014 1411 aa17.98■□□□□ 0.47
TMEM260-215ENST00000557626 PSMD14O00487 310 aa17.98■□□□□ 0.47
TMEM260-215ENST00000557626 ALDH1A1P00352 501 aa17.98■□□□□ 0.47
TMEM260-215ENST00000557626 MOB2Q70IA6 237 aa17.98■□□□□ 0.47
TMEM260-215ENST00000557626 ERO1AQ96HE7 468 aa17.98■□□□□ 0.47
TMEM260-215ENST00000557626 A0A1W2PPC1 479 aa17.97■□□□□ 0.47
TMEM260-215ENST00000557626 UBE2Q2LH0YL09 131 aa17.97■□□□□ 0.47
TMEM260-215ENST00000557626 ANKRD13DQ6ZTN6 518 aa17.97■□□□□ 0.47
TMEM260-215ENST00000557626 STXBP5LQ9Y2K9 1186 aa17.97■□□□□ 0.47
TMEM260-215ENST00000557626 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.96■□□□□ 0.47
TMEM260-215ENST00000557626 EFCC1Q9HA90 598 aa17.96■□□□□ 0.47
TMEM260-215ENST00000557626 ASTN2O75129 1339 aaPredicted RBP17.96■□□□□ 0.46
TMEM260-215ENST00000557626 RPS12P25398 132 aaKnown RBP17.95■□□□□ 0.46
TMEM260-215ENST00000557626 TEFQ10587 303 aa17.95■□□□□ 0.46
TMEM260-215ENST00000557626 NBPF11Q86T75 865 aa17.95■□□□□ 0.46
TMEM260-215ENST00000557626 MPNDQ8N594 471 aa17.95■□□□□ 0.46
TMEM260-215ENST00000557626 CD99L2Q8TCZ2 262 aa17.95■□□□□ 0.46
TMEM260-215ENST00000557626 SIPA1L3O60292 1781 aaPredicted RBP17.94■□□□□ 0.46
TMEM260-215ENST00000557626 TTLL12Q14166 644 aaPredicted RBP17.94■□□□□ 0.46
TMEM260-215ENST00000557626 HLFQ16534 295 aa17.94■□□□□ 0.46
TMEM260-215ENST00000557626 SLC9C1Q4G0N8 1177 aa17.94■□□□□ 0.46
TMEM260-215ENST00000557626 DEFB123Q8N688 67 aa17.94■□□□□ 0.46
TMEM260-215ENST00000557626 MTHFSDQ2M296 383 aaKnown RBP17.93■□□□□ 0.46
TMEM260-215ENST00000557626 ANGEL2Q5VTE6 544 aaKnown RBP17.93■□□□□ 0.46
TMEM260-215ENST00000557626 CCER1Q8TC90 406 aaPredicted RBP17.93■□□□□ 0.46
TMEM260-215ENST00000557626 USP16Q9Y5T5 823 aa17.93■□□□□ 0.46
TMEM260-215ENST00000557626 KDM3BQ7LBC6 1761 aa17.92■□□□□ 0.46
TMEM260-215ENST00000557626 COL9A1P20849 921 aa17.92■□□□□ 0.46
TMEM260-215ENST00000557626 PIAS4Q8N2W9 510 aaPredicted RBP17.92■□□□□ 0.46
TMEM260-215ENST00000557626 MYCP01106 439 aaPredicted RBP17.91■□□□□ 0.46
TMEM260-215ENST00000557626 TCIRG1Q13488 830 aa17.91■□□□□ 0.46
TMEM260-215ENST00000557626 WTIPA6NIX2 430 aaPredicted RBP17.9■□□□□ 0.46
TMEM260-215ENST00000557626 IL13P35225 146 aa17.9■□□□□ 0.46
TMEM260-215ENST00000557626 GPR153Q6NV75 609 aa17.9■□□□□ 0.46
TMEM260-215ENST00000557626 NR2E3Q9Y5X4 410 aa17.9■□□□□ 0.46
TMEM260-215ENST00000557626 ABCC4O15439 1325 aa17.9■□□□□ 0.46
TMEM260-215ENST00000557626 IBTKQ9P2D0 1353 aaPredicted RBP17.9■□□□□ 0.46
TMEM260-215ENST00000557626 LAMB4A4D0S4 1761 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 NUP98P52948 1817 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 C3orf67Q6ZVT6 689 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 Q7L0L9 218 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 DBNDD1Q9H9R9 158 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 CLSPNQ9HAW4 1339 aa17.89■□□□□ 0.45
TMEM260-215ENST00000557626 SCARF1Q14162 830 aa17.88■□□□□ 0.45
TMEM260-215ENST00000557626 IFNL1Q8IU54 200 aa17.88■□□□□ 0.45
TMEM260-215ENST00000557626 SP8Q8IXZ3 490 aa17.88■□□□□ 0.45
TMEM260-215ENST00000557626 HTATIP2Q9BUP3 242 aa17.88■□□□□ 0.45
TMEM260-215ENST00000557626 ERBB4Q15303 1308 aa17.88■□□□□ 0.45
TMEM260-215ENST00000557626 DDX60Q8IY21 1712 aaKnown RBP17.87■□□□□ 0.45
TMEM260-215ENST00000557626 HMOX1P09601 288 aa17.87■□□□□ 0.45
TMEM260-215ENST00000557626 PTCH2Q9Y6C5 1203 aa17.87■□□□□ 0.45
TMEM260-215ENST00000557626 DUOX1Q9NRD9 1551 aa17.87■□□□□ 0.45
TMEM260-215ENST00000557626 EYSQ5T1H1 3165 aa17.86■□□□□ 0.45
TMEM260-215ENST00000557626 KCNQ3O43525 872 aa17.86■□□□□ 0.45
TMEM260-215ENST00000557626 NLRP3Q96P20 1036 aa17.86■□□□□ 0.45
TMEM260-215ENST00000557626 MANSC4A6NHS7 340 aaPredicted RBP17.85■□□□□ 0.45
TMEM260-215ENST00000557626 NBPF26B4DH59 902 aa17.85■□□□□ 0.45
TMEM260-215ENST00000557626 ZBTB7BO15156 539 aaPredicted RBP17.85■□□□□ 0.45
TMEM260-215ENST00000557626 BBOX1O75936 387 aa17.85■□□□□ 0.45
TMEM260-215ENST00000557626 INHBEP58166 350 aa17.85■□□□□ 0.45
TMEM260-215ENST00000557626 SP3Q02447 781 aa17.85■□□□□ 0.45
TMEM260-215ENST00000557626 SPRYD7Q5W111 196 aa17.85■□□□□ 0.45
TMEM260-215ENST00000557626 NBPF10Q6P3W6 841 aaKnown RBP17.85■□□□□ 0.45
TMEM260-215ENST00000557626 RTL9Q8NET4 1388 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms