RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.15	□□□□□ -0.46
PRKCH-208	ENST00000553846	RNF186	Q9NXI6	227 aa		12.15	□□□□□ -0.46
PRKCH-208	ENST00000553846	SCN9A	Q15858	1988 aa		12.15	□□□□□ -0.46
PRKCH-208	ENST00000553846	DDX60	Q8IY21	1712 aa	Known RBP	12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	TCERG1	O14776	1098 aa	Known RBP	12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	RAD17	O75943	681 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	EIF4A1	P60842	406 aa	Known RBP	12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	TAF7	Q15545	349 aa	Predicted RBP	12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	RGMB	Q6NW40	437 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	USP48	Q86UV5	1035 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	ZBTB3	Q9H5J0	574 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	ZNF408	Q9H9D4	720 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	MIS18A	Q9NYP9	233 aa		12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	CNOT7	Q9UIV1	285 aa	Known RBP	12.14	□□□□□ -0.47
PRKCH-208	ENST00000553846	SZT2	Q5T011	3432 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	SLC10A3	P09131	477 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	KIF23	Q02241	960 aa	Predicted RBP	12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	PDIA6	Q15084	440 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	SP8	Q8IXZ3	490 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	MICALL2	Q8IY33	904 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	SUPT20H	Q8NEM7	779 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	RTL9	Q8NET4	1388 aa		12.13	□□□□□ -0.47
PRKCH-208	ENST00000553846	ERBB4	Q15303	1308 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	ZNF609	O15014	1411 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	PARP10	Q53GL7	1025 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	DPP8	Q6V1X1	898 aa	Predicted RBP	12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	KIF6	Q6ZMV9	814 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	NGEF	Q8N5V2	710 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	RTF1	Q92541	710 aa	Known RBP	12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	DPF2	Q92785	391 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	CSRNP1	Q96S65	589 aa		12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	GBA2	Q9HCG7	927 aa	Predicted RBP	12.12	□□□□□ -0.47
PRKCH-208	ENST00000553846	PSME4	Q14997	1843 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	PAPPA2	Q9BXP8	1791 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	ADM5	C9JUS6	153 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	BBOX1	O75936	387 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	TRIM26	Q12899	539 aa	Predicted RBP	12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	TNIP1	Q15025	636 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	SAMD7	Q7Z3H4	446 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	CTU1	Q7Z7A3	348 aa	Known RBP	12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	NLRP3	Q96P20	1036 aa		12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.11	□□□□□ -0.47
PRKCH-208	ENST00000553846	ZNF646	O15015	1829 aa	Predicted RBP	12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	TRPA1	O75762	1119 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	MYL6B	P14649	208 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	KRT26	Q7Z3Y9	468 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	PPP1R42	Q7Z4L9	355 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	MPND	Q8N594	471 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	CCDC102A	Q96A19	550 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	BCL2L13	Q9BXK5	485 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	HPS5	Q9UPZ3	1129 aa		12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846	RRP7A	Q9Y3A4	280 aa	Known RBP	12.1	□□□□□ -0.47
PRKCH-208	ENST00000553846		H7C1D1	291 aa		12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	PSMD14	O00487	310 aa		12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	GRAP	Q13588	217 aa		12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	PROSER3	Q2NL68	480 aa		12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	RASAL3	Q86YV0	1011 aa		12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	GRAPL	Q8TC17	118 aa	Predicted RBP	12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	UTP14A	Q9BVJ6	771 aa	Known RBP	12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	RANBP2	P49792	3224 aa	Known RBP	12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	ASTN2	O75129	1339 aa	Predicted RBP	12.09	□□□□□ -0.47
PRKCH-208	ENST00000553846	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	ZNF157	P51786	506 aa	Predicted RBP	12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	NLRP10	Q86W26	655 aa		12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	KCNQ5	Q9NR82	932 aa		12.08	□□□□□ -0.48
PRKCH-208	ENST00000553846	RBBP6	Q7Z6E9	1792 aa	Known RBP	12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	HCLS1	P14317	486 aa	Predicted RBP	12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	RPS12	P25398	132 aa	Known RBP	12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	PNISR	Q8TF01	805 aa	Known RBP	12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	PLEKHF1	Q96S99	279 aa		12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	LAMB1	P07942	1786 aa		12.07	□□□□□ -0.48
PRKCH-208	ENST00000553846	PPP2R1A	P30153	589 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	TMC4	Q7Z404	712 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	C2orf69	Q8N8R5	385 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	CDCA5	Q96FF9	252 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	CFAP53	Q96M91	514 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	THUMPD2	Q9BTF0	503 aa	Known RBP	12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	GGA3	Q9NZ52	723 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	POLL	Q9UGP5	575 aa		12.06	□□□□□ -0.48
PRKCH-208	ENST00000553846	ZNF280A	P59817	542 aa	Predicted RBP	12.05	□□□□□ -0.48
PRKCH-208	ENST00000553846	NOM1	Q5C9Z4	860 aa	Known RBP	12.05	□□□□□ -0.48
PRKCH-208	ENST00000553846	DBNDD1	Q9H9R9	158 aa		12.05	□□□□□ -0.48
PRKCH-208	ENST00000553846	NUDC	Q9Y266	331 aa		12.05	□□□□□ -0.48
PRKCH-208	ENST00000553846	ANXA1	P04083	346 aa		12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	VIL1	P09327	827 aa	Known RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	PKN2	Q16513	984 aa	Known RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	KIF4B	Q2VIQ3	1234 aa		12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	DDX46	Q7L014	1031 aa	Known RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	REM2	Q8IYK8	340 aa	Predicted RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	ZNF296	Q8WUU4	475 aa	Predicted RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	CELF1	Q92879	486 aa	Known RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	TMX4	Q9H1E5	349 aa	Predicted RBP	12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	SH3TC1	Q8TE82	1336 aa		12.04	□□□□□ -0.48
PRKCH-208	ENST00000553846	ECE2	O60344	883 aa		12.03	□□□□□ -0.48
PRKCH-208	ENST00000553846	FKBP1B	P68106	108 aa		12.03	□□□□□ -0.48
PRKCH-208	ENST00000553846	GPSM2	P81274	684 aa		12.03	□□□□□ -0.48
PRKCH-208	ENST00000553846	WASHC4	Q2M389	1173 aa		12.03	□□□□□ -0.48
PRKCH-208	ENST00000553846	DCPS	Q96C86	337 aa	Known RBP	12.03	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms