RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 TAF1CQ15572 869 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-210ENST00000552045 CTC1Q2NKJ3 1217 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 ZNF394Q53GI3 561 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 MRPL14Q6P1L8 145 aaKnown RBP9.49□□□□□ -0.89
LIMA1-210ENST00000552045 ZNF654Q8IZM8 581 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 CEP63Q96MT8 703 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 SRCIN1Q9C0H9 1055 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 CHRDQ9H2X0 955 aa9.49□□□□□ -0.89
LIMA1-210ENST00000552045 TTLL8A6PVC2 850 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 EGFRP00533 1210 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 POLR3DP05423 398 aaPredicted RBP9.48□□□□□ -0.89
LIMA1-210ENST00000552045 MEI1Q5TIA1 1274 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 USP48Q86UV5 1035 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 GALNT12Q8IXK2 581 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 FAM177A1Q8N128 213 aaPredicted RBP9.48□□□□□ -0.89
LIMA1-210ENST00000552045 GMLQ99445 158 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 CRISPLD1Q9H336 500 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 SRA1Q9HD15 236 aaKnown RBP9.48□□□□□ -0.89
LIMA1-210ENST00000552045 PCDHGB7Q9Y5F8 929 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 GJA3Q9Y6H8 435 aa9.48□□□□□ -0.89
LIMA1-210ENST00000552045 EREGO14944 169 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 USP17L7P0C7H9 530 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 NXPE4Q6UWF7 544 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 CRIPAKQ8N1N5 446 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 C1orf127Q8N9H9 656 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 BCO2Q9BYV7 579 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 C11orf16Q9NQ32 467 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 ABI2Q9NYB9 513 aaPredicted RBP9.47□□□□□ -0.89
LIMA1-210ENST00000552045 CNTN3Q9P232 1028 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 GGT7Q9UJ14 662 aa9.47□□□□□ -0.89
LIMA1-210ENST00000552045 ST13P50502 369 aaKnown RBP9.46□□□□□ -0.9
LIMA1-210ENST00000552045 NLRP13Q86W25 1043 aa9.46□□□□□ -0.9
LIMA1-210ENST00000552045 PMEPA1Q969W9 287 aa9.46□□□□□ -0.9
LIMA1-210ENST00000552045 INPP5FQ9Y2H2 1132 aa9.46□□□□□ -0.9
LIMA1-210ENST00000552045 GADD45BO75293 160 aaPredicted RBP9.45□□□□□ -0.9
LIMA1-210ENST00000552045 ATP2B1P20020 1258 aa9.45□□□□□ -0.9
LIMA1-210ENST00000552045 GPAMQ9HCL2 828 aa9.45□□□□□ -0.9
LIMA1-210ENST00000552045 FIGNL2A6NMB9 653 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 DNAJA1P31689 397 aaKnown RBP9.44□□□□□ -0.9
LIMA1-210ENST00000552045 SCARF1Q14162 830 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 SAMD5Q5TGI4 173 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 NLRP8Q86W28 1048 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 SUV39H2Q9H5I1 410 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 RUBCNLQ9H714 662 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 BRD7Q9NPI1 651 aa9.44□□□□□ -0.9
LIMA1-210ENST00000552045 SOS2Q07890 1332 aaPredicted RBP9.44□□□□□ -0.9
LIMA1-210ENST00000552045 POTECB2RU33 542 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 AXIN1O15169 862 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 F11P03951 625 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 CES1P23141 567 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 GRM2Q14416 872 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 TTC39BQ5VTQ0 682 aaPredicted RBP9.43□□□□□ -0.9
LIMA1-210ENST00000552045 DHX38Q92620 1227 aaKnown RBP9.43□□□□□ -0.9
LIMA1-210ENST00000552045 ARMC5Q96C12 935 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 ZCCHC2Q9C0B9 1178 aaKnown RBP9.43□□□□□ -0.9
LIMA1-210ENST00000552045 DYRK1BQ9Y463 629 aa9.43□□□□□ -0.9
LIMA1-210ENST00000552045 VEGFBP49765 207 aa9.42□□□□□ -0.9
LIMA1-210ENST00000552045 ARID5AQ03989 594 aa9.42□□□□□ -0.9
LIMA1-210ENST00000552045 DPH6Q7L8W6 267 aa9.42□□□□□ -0.9
LIMA1-210ENST00000552045 ERMP1Q7Z2K6 904 aa9.42□□□□□ -0.9
LIMA1-210ENST00000552045 PGBD3Q8N328 593 aa9.42□□□□□ -0.9
LIMA1-210ENST00000552045 DNAJC2Q99543 621 aaKnown RBP9.42□□□□□ -0.9
LIMA1-210ENST00000552045 GTF2F1P35269 517 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMA1-210ENST00000552045 KCNQ4P56696 695 aa9.41□□□□□ -0.9
LIMA1-210ENST00000552045 KIAA0319Q5VV43 1072 aa9.41□□□□□ -0.9
LIMA1-210ENST00000552045 AAASQ9NRG9 546 aa9.41□□□□□ -0.9
LIMA1-210ENST00000552045 SMARCA5O60264 1052 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-210ENST00000552045 GSTT1P30711 240 aa9.4□□□□□ -0.9
LIMA1-210ENST00000552045 SPATA32Q96LK8 384 aa9.4□□□□□ -0.9
LIMA1-210ENST00000552045 PUS7Q96PZ0 661 aaKnown RBP9.4□□□□□ -0.9
LIMA1-210ENST00000552045 CUEDC1Q9NWM3 386 aaPredicted RBP9.4□□□□□ -0.9
LIMA1-210ENST00000552045 PPP4R2Q9NY27 417 aa9.4□□□□□ -0.9
LIMA1-210ENST00000552045 KCNH4Q9UQ05 1017 aa9.4□□□□□ -0.9
LIMA1-210ENST00000552045 SASH3O75995 380 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 CYP2E1P05181 493 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-210ENST00000552045 BMP1P13497 986 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 VPS37DQ86XT2 251 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 GLIS3Q8NEA6 775 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 GAS2L1Q99501 681 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-210ENST00000552045 EHD4Q9H223 541 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 COPRSQ9NQ92 184 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 TRAK1Q9UPV9 953 aa9.39□□□□□ -0.91
LIMA1-210ENST00000552045 A0A1W2PP55 124 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 ST8SIA5O15466 376 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 EDN3P14138 238 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 GJA8P48165 433 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 EFHC2Q5JST6 749 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 Q6ZNB5 142 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 TRIM46Q7Z4K8 759 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 C3orf58Q8NDZ4 430 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 NOC4LQ9BVI4 516 aaKnown RBP9.38□□□□□ -0.91
LIMA1-210ENST00000552045 LNPKQ9C0E8 428 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 LATS2Q9NRM7 1088 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 KANSL3Q9P2N6 904 aa9.38□□□□□ -0.91
LIMA1-210ENST00000552045 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-210ENST00000552045 TARSP26639 723 aaKnown RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 CANXP27824 592 aaKnown RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 SFSWAPQ12872 951 aaKnown RBP9.37□□□□□ -0.91
LIMA1-210ENST00000552045 PAK2Q13177 524 aa9.37□□□□□ -0.91
LIMA1-210ENST00000552045 CCINQ13939 588 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms