RNA–Protein interactions for RNA: ENST00000548817.1

TROAP-208, Transcript of trophinin associated protein, human

TSL 3

Gene TROAP, Length 480 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TROAP-208	ENST00000548817	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.26	□□□□□ -0.61
TROAP-208	ENST00000548817	MICALL2	Q8IY33	904 aa		11.26	□□□□□ -0.61
TROAP-208	ENST00000548817	DCPS	Q96C86	337 aa	Known RBP	11.26	□□□□□ -0.61
TROAP-208	ENST00000548817	USP16	Q9Y5T5	823 aa		11.26	□□□□□ -0.61
TROAP-208	ENST00000548817	SNRPA1	P09661	255 aa	Known RBP	11.25	□□□□□ -0.61
TROAP-208	ENST00000548817	RASAL3	Q86YV0	1011 aa		11.25	□□□□□ -0.61
TROAP-208	ENST00000548817	PHACTR3	Q96KR7	559 aa		11.25	□□□□□ -0.61
TROAP-208	ENST00000548817	CFHR5	Q9BXR6	569 aa		11.25	□□□□□ -0.61
TROAP-208	ENST00000548817	COL3A1	P02461	1466 aa	Predicted RBP	11.25	□□□□□ -0.61
TROAP-208	ENST00000548817	PAPPA2	Q9BXP8	1791 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	HTT	P42858	3142 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	ERVV-1	B6SEH8	477 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	GPR25	O00155	361 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	RAD17	O75943	681 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	RPS12	P25398	132 aa	Known RBP	11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	NUTM1	Q86Y26	1132 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	SULF1	Q8IWU6	871 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	RSPH6A	Q9H0K4	717 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	POLR2A	P24928	1970 aa	Known RBP	11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	KIAA0100	Q14667	2235 aa	Known RBP	11.24	□□□□□ -0.61
TROAP-208	ENST00000548817		A0A0C4DFX4	3053 aa		11.24	□□□□□ -0.61
TROAP-208	ENST00000548817	NUP98	P52948	1817 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	NBPF26	B4DH59	902 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	KCNQ3	O43525	872 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	FKTN	O75072	461 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	PIP4K2A	P48426	406 aa	Predicted RBP	11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	HLF	Q16534	295 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	NBPF10	Q6P3W6	841 aa	Known RBP	11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	DPP8	Q6V1X1	898 aa	Predicted RBP	11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	SZT2	Q5T011	3432 aa		11.23	□□□□□ -0.61
TROAP-208	ENST00000548817	ADM5	C9JUS6	153 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	HTATSF1	O43719	755 aa	Known RBP	11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	BBOX1	O75936	387 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	MCM10	Q7L590	875 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	SAMD7	Q7Z3H4	446 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	SP8	Q8IXZ3	490 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	MPND	Q8N594	471 aa		11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	COLQ	Q9Y215	455 aa	Predicted RBP	11.22	□□□□□ -0.61
TROAP-208	ENST00000548817	LAMB4	A4D0S4	1761 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	TCERG1	O14776	1098 aa	Known RBP	11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	TBC1D8	O95759	1140 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	PPP2R1A	P30153	589 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	TM4SF4	P48230	202 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	TAF7	Q15545	349 aa	Predicted RBP	11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	DLK2	Q6UY11	383 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	SLC17A8	Q8NDX2	589 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	CDCA5	Q96FF9	252 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	NLRP3	Q96P20	1036 aa		11.21	□□□□□ -0.61
TROAP-208	ENST00000548817	DDX60	Q8IY21	1712 aa	Known RBP	11.21	□□□□□ -0.62
TROAP-208	ENST00000548817	MAP3K15	Q6ZN16	1313 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	SHTN1	A0MZ66	631 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	PRAMEF22	A3QJZ6	481 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	POTEF	A5A3E0	1075 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	YDJC	A8MPS7	323 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	TMC4	Q7Z404	712 aa		11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	PNISR	Q8TF01	805 aa	Known RBP	11.2	□□□□□ -0.62
TROAP-208	ENST00000548817	ABCC4	O15439	1325 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	NTSR2	O95665	410 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	SREBF2	Q12772	1141 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	DCTN1	Q14203	1278 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	SLC51A	Q86UW1	340 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	NECTIN2	Q92692	538 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	GGA3	Q9NZ52	723 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	DUOX1	Q9NRD9	1551 aa		11.19	□□□□□ -0.62
TROAP-208	ENST00000548817	ZNF609	O15014	1411 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	LRRC37A	A6NMS7	1700 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	UBN2	Q6ZU65	1347 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	PSMD14	O00487	310 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	ALDH1A1	P00352	501 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	EGFR	P00533	1210 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	KIF4B	Q2VIQ3	1234 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	PARP10	Q53GL7	1025 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	SLC10A5	Q5PT55	438 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	SUSD4	Q5VX71	490 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	KIF6	Q6ZMV9	814 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	PPP1R42	Q7Z4L9	355 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	NGEF	Q8N5V2	710 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	ARMC5	Q96C12	935 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	PNN	Q9H307	717 aa	Known RBP	11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	ANKRD36C	Q5JPF3	1778 aa		11.18	□□□□□ -0.62
TROAP-208	ENST00000548817	CENPF	P49454	3210 aa		11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	PITPNM2	Q9BZ72	1349 aa		11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	MNX1	P50219	401 aa	Predicted RBP	11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	C3orf67	Q6ZVT6	689 aa		11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	ZNF34	Q8IZ26	560 aa		11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	MIS18A	Q9NYP9	233 aa		11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	RANBP2	P49792	3224 aa	Known RBP	11.17	□□□□□ -0.62
TROAP-208	ENST00000548817	GPT	P24298	496 aa		11.16	□□□□□ -0.62
TROAP-208	ENST00000548817	OTUD5	Q96G74	571 aa		11.16	□□□□□ -0.62
TROAP-208	ENST00000548817	RRP7A	Q9Y3A4	280 aa	Known RBP	11.16	□□□□□ -0.62
TROAP-208	ENST00000548817	TRIM17	Q9Y577	477 aa		11.16	□□□□□ -0.62
TROAP-208	ENST00000548817	BRCA2	P51587	3418 aa		11.16	□□□□□ -0.62
TROAP-208	ENST00000548817	MAPK8IP3	Q9UPT6	1336 aa		11.15	□□□□□ -0.62
TROAP-208	ENST00000548817	RBM26	Q5T8P6	1007 aa	Known RBP	11.15	□□□□□ -0.62
TROAP-208	ENST00000548817	OTOP1	Q7RTM1	612 aa		11.15	□□□□□ -0.62
TROAP-208	ENST00000548817	LAMB2	P55268	1798 aa		11.15	□□□□□ -0.62
TROAP-208	ENST00000548817	EN2	P19622	333 aa	Predicted RBP	11.14	□□□□□ -0.63
TROAP-208	ENST00000548817	INHBE	P58166	350 aa		11.14	□□□□□ -0.63

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