RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 ARAP3Q8WWN8 1544 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 GIGYF1O75420 1035 aaPredicted RBP11.53□□□□□ -0.56
TRAF1-203ENST00000546084 PTPN21Q16825 1174 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 AMOTQ4VCS5 1084 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 LINS1Q8NG48 757 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 TBX22Q9Y458 520 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 TAF6LQ9Y6J9 622 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 MAP3K11Q16584 847 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 TTLL7Q6ZT98 887 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 ZNF589Q86UQ0 364 aaPredicted RBP11.53□□□□□ -0.56
TRAF1-203ENST00000546084 HOMER1Q86YM7 354 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 PDILTQ8N807 584 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 NEK1Q96PY6 1258 aa11.53□□□□□ -0.56
TRAF1-203ENST00000546084 HTATSF1O43719 755 aaKnown RBP11.52□□□□□ -0.56
TRAF1-203ENST00000546084 EPHA10Q5JZY3 1008 aa11.52□□□□□ -0.56
TRAF1-203ENST00000546084 MICU3Q86XE3 530 aa11.52□□□□□ -0.56
TRAF1-203ENST00000546084 VPS37DQ86XT2 251 aa11.52□□□□□ -0.56
TRAF1-203ENST00000546084 ATP10DQ9P241 1426 aa11.52□□□□□ -0.56
TRAF1-203ENST00000546084 KIF24Q5T7B8 1368 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 CAMSAP1Q5T5Y3 1602 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 CD163L1Q9NR16 1453 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 LETM1O95202 739 aaPredicted RBP11.52□□□□□ -0.57
TRAF1-203ENST00000546084 MARCKSP29966 332 aaPredicted RBP11.52□□□□□ -0.57
TRAF1-203ENST00000546084 UBE2HP62256 183 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 CUL4AQ13619 759 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 CCDC158Q5M9N0 1113 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 PPP4R3BQ5MIZ7 849 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 PI16Q6UXB8 463 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 IFNL2Q8IZJ0 200 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 TPCN1Q9ULQ1 816 aa11.52□□□□□ -0.57
TRAF1-203ENST00000546084 SNAP23O00161 211 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 ANO6Q4KMQ2 910 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 SSH3Q8TE77 659 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 OSBPL3Q9H4L5 887 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 MINDY4BA8MYZ0 360 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 PDCP20941 246 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 KIDINS220Q9ULH0 1771 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 CCDC171Q6TFL3 1326 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 SAMD1Q6SPF0 538 aaPredicted RBP11.51□□□□□ -0.57
TRAF1-203ENST00000546084 GPHNQ9NQX3 736 aaPredicted RBP11.51□□□□□ -0.57
TRAF1-203ENST00000546084 NEURL4Q96JN8 1562 aa11.51□□□□□ -0.57
TRAF1-203ENST00000546084 SNRPA1P09661 255 aaKnown RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 LIG1P18858 919 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 HSPA4P34932 840 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 COL9A3Q14050 684 aaPredicted RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 LDHAL6AQ6ZMR3 332 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 CCDC186Q7Z3E2 898 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 SYNE4Q8N205 404 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 MYRIPQ8NFW9 859 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 DNAJC5Q9H3Z4 198 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 GJB4Q9NTQ9 266 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 A2ML1A8K2U0 1454 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 PTPRMP28827 1452 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 HECW2Q9P2P5 1572 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 LMTK2Q8IWU2 1503 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 SLC27A2O14975 620 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 PTGS1P23219 599 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 KCNQ4P56696 695 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 PIP4K2BP78356 416 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 UVSSAQ2YD98 709 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 ZKSCAN3Q9BRR0 538 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 MYL10Q9BUA6 226 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 PUS3Q9BZE2 481 aaKnown RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 USP6P35125 1406 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 USP32Q8NFA0 1604 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 ALKQ9UM73 1620 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 ZNF165P49910 485 aa11.5□□□□□ -0.57
TRAF1-203ENST00000546084 TRMT112Q9UI30 125 aaKnown RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 ZC3H13Q5T200 1668 aaKnown RBP11.5□□□□□ -0.57
TRAF1-203ENST00000546084 IGSF1Q8N6C5 1336 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 LRRC24Q50LG9 513 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 VPS53Q5VIR6 699 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 PDCL2Q8N4E4 241 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 PRIMPOLQ96LW4 560 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 PPLO60437 1756 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 RAD50Q92878 1312 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 GOLGA8BA8MQT2 603 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 VGLL3A8MV65 326 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 CCDC94Q9BW85 323 aaPredicted RBP11.49□□□□□ -0.57
TRAF1-203ENST00000546084 DDX21Q9NR30 783 aaKnown RBP eCLIP11.49□□□□□ -0.57
TRAF1-203ENST00000546084 PPP6R1Q9UPN7 881 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 KIF6Q6ZMV9 814 aa11.49□□□□□ -0.57
TRAF1-203ENST00000546084 ZFP91Q96JP5 570 aaPredicted RBP11.49□□□□□ -0.57
TRAF1-203ENST00000546084 NEXMIFQ5QGS0 1516 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 SASH1O94885 1247 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 FSIP1Q8NA03 581 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 TRIM29Q14134 588 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 GCKRQ14397 625 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 SPECC1Q5M775 1068 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 ZSCAN31Q96LW9 406 aaPredicted RBP11.48□□□□□ -0.57
TRAF1-203ENST00000546084 TMOD3Q9NYL9 352 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 hCG_1642624A0A1W2PR95 340 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 HIP1O00291 1037 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 LRMPQ12912 555 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 MPHOSPH8Q99549 860 aa11.48□□□□□ -0.57
TRAF1-203ENST00000546084 KIAA0232Q92628 1395 aa11.47□□□□□ -0.57
TRAF1-203ENST00000546084 A0A1B0GVL5 298 aa11.47□□□□□ -0.57
TRAF1-203ENST00000546084 KLHL10Q6JEL2 608 aa11.47□□□□□ -0.57
TRAF1-203ENST00000546084 CMTR1Q8N1G2 835 aaKnown RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms