RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ABCF2Q9UG63 623 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 BLOC1S6Q9UL45 172 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 TMCC3Q9ULS5 477 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 THRAP3Q9Y2W1 955 aaKnown RBP10.35□□□□□ -0.75
VPS13D-212ENST00000543766 SAMD9LQ8IVG5 1584 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 RALGAPBQ86X10 1494 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 ZBED6P86452 979 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 AASDHPPTQ9NRN7 309 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 SEL1LQ9UBV2 794 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 SBNO2Q9Y2G9 1366 aa10.35□□□□□ -0.75
VPS13D-212ENST00000543766 GOLGA6L19H0YKK7 550 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 MYO1CO00159 1063 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 PYGLP06737 847 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 OLFML1Q6UWY5 402 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 FAM114A1Q8IWE2 563 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 SLC43A3Q8NBI5 491 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 TMEM63CQ9P1W3 806 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 C9orf131Q5VYM1 1079 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 CTNNBL1Q8WYA6 563 aaPredicted RBP10.34□□□□□ -0.75
VPS13D-212ENST00000543766 USP47Q96K76 1375 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 SMC2O95347 1197 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 FAM163BP0C2L3 166 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 GCKP35557 465 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 DPH6Q7L8W6 267 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 SUGP1Q8IWZ8 645 aaKnown RBP10.34□□□□□ -0.75
VPS13D-212ENST00000543766 MYO5CQ9NQX4 1742 aa10.34□□□□□ -0.75
VPS13D-212ENST00000543766 PLXNC1O60486 1568 aa10.33□□□□□ -0.75
VPS13D-212ENST00000543766 CBFA2T2O43439 604 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 ADCY2Q08462 1091 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 KIF4BQ2VIQ3 1234 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 STAG2Q8N3U4 1231 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 TBC1D22AQ8WUA7 517 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 ANKRD18BA2A2Z9 1011 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 B3GALNT1O75752 331 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 SLFN14P0C7P3 912 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 POU5F1Q01860 360 aaKnown RBP10.33□□□□□ -0.76
VPS13D-212ENST00000543766 SEPT2Q15019 361 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 CACTIN-AS1Q8N1I8 211 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 ZNF521Q96K83 1311 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 TERF2Q15554 542 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 KANK3Q6NY19 840 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 TCEAL9Q9UHQ7 104 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 PCDHGA4Q9Y5G9 962 aa10.33□□□□□ -0.76
VPS13D-212ENST00000543766 SNX32Q86XE0 403 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 CCDC191Q8NCU4 936 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 SLC39A3Q9BRY0 314 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 SENP3-EIF4A1A0A087X0R7 540 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 DDX11L8A8MPP1 907 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 VASPP50552 380 aaPredicted RBP10.32□□□□□ -0.76
VPS13D-212ENST00000543766 IGBP1P78318 339 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 SYT10Q6XYQ8 523 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 RBM46Q8TBY0 533 aaKnown RBP10.32□□□□□ -0.76
VPS13D-212ENST00000543766 MPHOSPH9Q99550 1183 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 KIAA1107Q9UPP5 1409 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 UNC13BO14795 1591 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 PDLIM2Q96JY6 352 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 PHACTR1Q9C0D0 580 aa10.32□□□□□ -0.76
VPS13D-212ENST00000543766 NOL7Q9UMY1 257 aaKnown RBP10.32□□□□□ -0.76
VPS13D-212ENST00000543766 AGAP9Q5VTM2 703 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 TTC37Q6PGP7 1564 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 HDGFL2Q7Z4V5 671 aaPredicted RBP10.31□□□□□ -0.76
VPS13D-212ENST00000543766 CCDC26Q8TAB7 109 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 RUFY1Q96T51 708 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 IKBKGQ9Y6K9 419 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 PTPRGP23470 1445 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 C11orf91Q3C1V1 193 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 SOGA3Q5TF21 947 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 AS3MTQ9HBK9 375 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 ATF5Q9Y2D1 282 aaPredicted RBP10.31□□□□□ -0.76
VPS13D-212ENST00000543766 TSPY2A6NKD2 308 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 FMNL1O95466 1100 aaPredicted RBP10.31□□□□□ -0.76
VPS13D-212ENST00000543766 TSPY3P0CV98 308 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 TSPY8P0CW00 308 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 MATR3P43243 847 aaKnown RBP eCLIP10.31□□□□□ -0.764e-7■■■■□ 26.1
VPS13D-212ENST00000543766 CLCN2P51788 898 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 TSPY1Q01534 308 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 GUCY1B3Q02153 619 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 SKIV2LQ15477 1246 aaKnown RBP10.31□□□□□ -0.76
VPS13D-212ENST00000543766 DCLK2Q8N568 766 aa10.31□□□□□ -0.76
VPS13D-212ENST00000543766 MMEP08473 750 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 GNAT2P19087 354 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 RFX1P22670 979 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 C14orf80Q86SX3 495 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 USP33Q8TEY7 942 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS13D-212ENST00000543766 LDHCP07864 332 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 TGFB3P10600 412 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 DHRS1Q96LJ7 313 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 PDCD2Q16342 344 aaPredicted RBP10.3□□□□□ -0.76
VPS13D-212ENST00000543766 PMFBP1Q8TBY8 1022 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 SPATA7Q9P0W8 599 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 MAPK8IP3Q9UPT6 1336 aa10.3□□□□□ -0.76
VPS13D-212ENST00000543766 MROH2AA6NES4 1674 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 SLC4A2P04920 1241 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 AMPD3Q01432 767 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 CCDC73Q6ZRK6 1079 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 SLF2Q8IX21 1173 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 SCLT1Q96NL6 688 aa10.29□□□□□ -0.76
VPS13D-212ENST00000543766 LARP6Q9BRS8 491 aaKnown RBP10.29□□□□□ -0.76
VPS13D-212ENST00000543766 RRP7BPQ9NSQ0 103 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms