RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-219ENST00000541513 USP31Q70CQ4 1352 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 HOMER1Q86YM7 354 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 ABCA9Q8IUA7 1624 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 AMOTL1Q8IY63 956 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 TRPM4Q8TD43 1214 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 SH3TC2Q8TF17 1288 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 NAP1L5Q96NT1 182 aaPredicted RBP7.14□□□□□ -1.27
DDB1-219ENST00000541513 CCDC85AQ96PX6 553 aaPredicted RBP7.14□□□□□ -1.27
DDB1-219ENST00000541513 MAP3K4Q9Y6R4 1608 aa7.14□□□□□ -1.27
DDB1-219ENST00000541513 KIF14Q15058 1648 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 MAGI3Q5TCQ9 1506 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 EHBP1L1Q8N3D4 1523 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 TRIM6-TRIM34B2RNG4 842 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 IFRD1O00458 451 aaPredicted RBP7.13□□□□□ -1.27
DDB1-219ENST00000541513 MZF1P28698 734 aaPredicted RBP7.13□□□□□ -1.27
DDB1-219ENST00000541513 CHMP4BP1P59074 171 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 SAFB2Q14151 953 aaKnown RBP eCLIP7.13□□□□□ -1.27
DDB1-219ENST00000541513 KRT26Q7Z3Y9 468 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 PACS2Q86VP3 889 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 ZNF700Q9H0M5 742 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 TMEM260Q9NX78 707 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 CNTN3Q9P232 1028 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 TSPOAP1O95153 1857 aa7.13□□□□□ -1.27
DDB1-219ENST00000541513 PPRC1Q5VV67 1664 aaKnown RBP7.12□□□□□ -1.27
DDB1-219ENST00000541513 TK2O00142 265 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 SSBP05455 408 aaKnown RBP eCLIP7.12□□□□□ -1.27
DDB1-219ENST00000541513 LIG1P18858 919 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 ATP6V1AP38606 617 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 POU5F1BQ06416 359 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 ERMP1Q7Z2K6 904 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 GJD3Q8N144 294 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 TSEN2Q8NCE0 465 aaKnown RBP7.12□□□□□ -1.27
DDB1-219ENST00000541513 ZNF512BQ96KM6 892 aaPredicted RBP7.12□□□□□ -1.27
DDB1-219ENST00000541513 FEZ1Q99689 392 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 FBXO9Q9UK97 447 aaPredicted RBP7.12□□□□□ -1.27
DDB1-219ENST00000541513 STRIP2Q9ULQ0 834 aa7.12□□□□□ -1.27
DDB1-219ENST00000541513 SUPT6HQ7KZ85 1726 aaKnown RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 MYO5CQ9NQX4 1742 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 FAM221BA6H8Z2 402 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 LGR5O75473 907 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 LDHAP00338 332 aaKnown RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 EIF4BP23588 611 aaKnown RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 ST13P50502 369 aaKnown RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 NFE2Q16621 373 aaPredicted RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 OXLD1Q5BKU9 147 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 C16orf46Q6P387 395 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 Q6ZNB5 142 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 ANKS3Q6ZW76 656 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 FAM9BQ8IZU0 186 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 TRIM55Q9BYV6 548 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 NIF3L1Q9GZT8 377 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 NEUROD4Q9HD90 331 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 AVENQ9NQS1 362 aaPredicted RBP7.11□□□□□ -1.27
DDB1-219ENST00000541513 SPG7Q9UQ90 795 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 MSRB2Q9Y3D2 182 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 TTC37Q6PGP7 1564 aa7.11□□□□□ -1.27
DDB1-219ENST00000541513 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.11□□□□□ -1.27
DDB1-219ENST00000541513 FGAP02671 866 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 MCCP23508 829 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 WDR78Q5VTH9 848 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 C16orf86Q6ZW13 317 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 CACTIN-AS1Q8N1I8 211 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 PGBD3Q8N328 593 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 KANSL2Q9H9L4 492 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 SFMBT1Q9UHJ3 866 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 ARAP3Q8WWN8 1544 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 LRRC9Q6ZRR7 1453 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 CDC42BPAQ5VT25 1732 aa7.1□□□□□ -1.27
DDB1-219ENST00000541513 MTUS2Q5JR59 1369 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 ESYT3A0FGR9 886 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 TSPAN6O43657 245 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 KIF4AO95239 1232 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 HCLS1P14317 486 aaPredicted RBP7.09□□□□□ -1.27
DDB1-219ENST00000541513 PSEN2P49810 448 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 EPHB1P54762 984 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 ZRSR2Q15696 482 aaKnown RBP7.09□□□□□ -1.27
DDB1-219ENST00000541513 Q3C1V9 767 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 BRDTQ58F21 947 aaPredicted RBP7.09□□□□□ -1.27
DDB1-219ENST00000541513 PPP4R3BQ5MIZ7 849 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 RAVER1Q8IY67 606 aaKnown RBP7.09□□□□□ -1.27
DDB1-219ENST00000541513 ARMC2Q8NEN0 867 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 TSR2Q969E8 191 aaKnown RBP7.09□□□□□ -1.27
DDB1-219ENST00000541513 KCNH8Q96L42 1107 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 CCDC113Q9H0I3 377 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 ARNT2Q9HBZ2 717 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 MAP10Q9P2G4 905 aa7.09□□□□□ -1.27
DDB1-219ENST00000541513 CD109Q6YHK3 1445 aa7.09□□□□□ -1.28
DDB1-219ENST00000541513 PREX2Q70Z35 1606 aa7.09□□□□□ -1.28
DDB1-219ENST00000541513 CFAP74Q9C0B2 1584 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 CDC42BPBQ9Y5S2 1711 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 KCNQ2O43526 872 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 HSP90AA1P07900 732 aaKnown RBP7.08□□□□□ -1.28
DDB1-219ENST00000541513 PTPN5P54829 565 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 PTPRNQ16849 979 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 LILRB2Q8N423 598 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 GAS2L2Q8NHY3 880 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 CSRNP1Q96S65 589 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 NAP1L4Q99733 375 aaKnown RBP7.08□□□□□ -1.28
DDB1-219ENST00000541513 CASS4Q9NQ75 786 aa7.08□□□□□ -1.28
DDB1-219ENST00000541513 STIM2Q9P246 746 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms