RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 ZNF335Q9H4Z2 1342 aaPredicted RBP11.44□□□□□ -0.58
CNOT4-212ENST00000541284 DDX21Q9NR30 783 aaKnown RBP eCLIP11.44□□□□□ -0.58
CNOT4-212ENST00000541284 SMC3Q9UQE7 1217 aa11.44□□□□□ -0.58
CNOT4-212ENST00000541284 WDR17Q8IZU2 1322 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 HCLS1P14317 486 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 TOB2Q14106 344 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 ERC1Q8IUD2 1116 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 KLHL34Q8N239 644 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 NECAB1Q8N987 351 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 FAM184AQ8NB25 1140 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 ALDH8A1Q9H2A2 487 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 PHF14O94880 888 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 RFX5P48382 616 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 ZNF589Q86UQ0 364 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 SH2B1Q9NRF2 756 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 CYP27B1O15528 508 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 KLHDC4Q8TBB5 520 aa11.43□□□□□ -0.58
CNOT4-212ENST00000541284 C9orf78Q9NZ63 289 aaPredicted RBP11.43□□□□□ -0.58
CNOT4-212ENST00000541284 FIBPO43427 364 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 RUFY2Q8WXA3 655 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 DDX17Q92841 729 aaKnown RBP11.42□□□□□ -0.58
CNOT4-212ENST00000541284 ZSCAN31Q96LW9 406 aaPredicted RBP11.42□□□□□ -0.58
CNOT4-212ENST00000541284 CHMP4AQ9BY43 222 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 TSGA10IPQ3SY00 556 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 TTC6Q86TZ1 520 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 CCDC8Q9H0W5 538 aaPredicted RBP11.42□□□□□ -0.58
CNOT4-212ENST00000541284 CYP46A1Q9Y6A2 500 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 NEURL1BA8MQ27 555 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 IFIT2P09913 472 aaKnown RBP11.42□□□□□ -0.58
CNOT4-212ENST00000541284 USPL1Q5W0Q7 1092 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 CDC37L1Q7L3B6 337 aa11.42□□□□□ -0.58
CNOT4-212ENST00000541284 OS9Q13438 667 aaPredicted RBP11.41□□□□□ -0.58
CNOT4-212ENST00000541284 GIMAP6Q6P9H5 292 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 ADCY5O95622 1261 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 CHGBP05060 677 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 ZNF830Q96NB3 372 aaPredicted RBP11.41□□□□□ -0.58
CNOT4-212ENST00000541284 SLC52A2Q9HAB3 445 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 ZNF609O15014 1411 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 KDM4AO75164 1064 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 C1orf141Q5JVX7 400 aa11.41□□□□□ -0.58
CNOT4-212ENST00000541284 EDC3Q96F86 508 aaKnown RBP11.41□□□□□ -0.58
CNOT4-212ENST00000541284 COL4A1P02462 1669 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 ECM29Q5VYK3 1845 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 CASP7P55210 303 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 PIBF1Q8WXW3 757 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 KCNF1Q9H3M0 494 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 SPTLC3Q9NUV7 552 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 UQCRHLA0A096LP55 91 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 ZBTB7CA1YPR0 619 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 LETM1O95202 739 aaPredicted RBP11.4□□□□□ -0.58
CNOT4-212ENST00000541284 UQCRHP07919 91 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 RPS6KB1P23443 525 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 GCKRQ14397 625 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 CSPP1Q1MSJ5 1256 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 PDCL3Q9H2J4 239 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 MYO5AQ9Y4I1 1855 aaKnown RBP11.4□□□□□ -0.58
CNOT4-212ENST00000541284 ELP1O95163 1332 aa11.4□□□□□ -0.58
CNOT4-212ENST00000541284 TAF5LO75529 589 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 SLC39A6Q13433 755 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 FAM173BQ6P4H8 233 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 ZNF790Q6PG37 636 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 MPNDQ8N594 471 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 TCEANC2Q96MN5 208 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 ZNF646O15015 1829 aaPredicted RBP11.39□□□□□ -0.59
CNOT4-212ENST00000541284 LIG1P18858 919 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 GPATCH3Q96I76 525 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 BOLA2Q9H3K6 86 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 DBNLQ9UJU6 430 aaKnown RBP11.39□□□□□ -0.59
CNOT4-212ENST00000541284 HSPA2P54652 639 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 RABL6Q3YEC7 729 aaPredicted RBP11.39□□□□□ -0.59
CNOT4-212ENST00000541284 SASS6Q6UVJ0 657 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 C17orf53Q8N3J3 647 aaPredicted RBP11.39□□□□□ -0.59
CNOT4-212ENST00000541284 TTC12Q9H892 705 aaPredicted RBP11.39□□□□□ -0.59
CNOT4-212ENST00000541284 BTAF1O14981 1849 aa11.39□□□□□ -0.59
CNOT4-212ENST00000541284 PTPN12Q05209 780 aaKnown RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 RBM43Q6ZSC3 357 aaKnown RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 COPRSQ9NQ92 184 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 RBM10P98175 930 aaKnown RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 AIMP1Q12904 312 aaKnown RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 JARID2Q92833 1246 aaPredicted RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 METTL22Q9BUU2 404 aaPredicted RBP11.38□□□□□ -0.59
CNOT4-212ENST00000541284 SIL1Q9H173 461 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 RFX7Q2KHR2 1363 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 HIP1O00291 1037 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 KIAA2012Q0VF49 1180 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 XAGE3Q8WTP9 111 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 ATP6V1DQ9Y5K8 247 aa11.38□□□□□ -0.59
CNOT4-212ENST00000541284 ZNF496Q96IT1 587 aaPredicted RBP11.37□□□□□ -0.59
CNOT4-212ENST00000541284 MRVI1Q9Y6F6 885 aa11.37□□□□□ -0.59
CNOT4-212ENST00000541284 BCL9O00512 1426 aa11.37□□□□□ -0.59
CNOT4-212ENST00000541284 ATP5JP18859 108 aa11.37□□□□□ -0.59
CNOT4-212ENST00000541284 G3BP1Q13283 466 aaKnown RBP eCLIP11.37□□□□□ -0.59
CNOT4-212ENST00000541284 LARP1Q6PKG0 1096 aaKnown RBP11.37□□□□□ -0.59
CNOT4-212ENST00000541284 SLAIN2Q9P270 581 aa11.37□□□□□ -0.59
CNOT4-212ENST00000541284 VPS37CA5D8V6 355 aaPredicted RBP11.36□□□□□ -0.59
CNOT4-212ENST00000541284 DYNC1I1O14576 645 aa11.36□□□□□ -0.59
CNOT4-212ENST00000541284 ZKSCAN1P17029 563 aaPredicted RBP11.36□□□□□ -0.59
CNOT4-212ENST00000541284 NDUFB9Q9Y6M9 179 aa11.36□□□□□ -0.59
CNOT4-212ENST00000541284 COPS6Q7L5N1 327 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms