RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 ZNF165P49910 485 aa12.28□□□□□ -0.44
CDC42SE1-207ENST00000540998 G3BP1Q13283 466 aaKnown RBP eCLIP12.28□□□□□ -0.44
CDC42SE1-207ENST00000540998 ZSCAN31Q96LW9 406 aaPredicted RBP12.28□□□□□ -0.44
CDC42SE1-207ENST00000540998 EID1Q9Y6B2 187 aa12.28□□□□□ -0.44
CDC42SE1-207ENST00000540998 USP42Q9H9J4 1324 aaKnown RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 NPHP1O15259 732 aa12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 NCBP1Q09161 790 aaKnown RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 HSP90AB4PQ58FF6 505 aa12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 ZSCAN25Q6NSZ9 544 aa12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 DDX46Q7L014 1031 aaKnown RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 NCOA5Q9HCD5 579 aaKnown RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 TRMT1Q9NXH9 659 aaKnown RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 DBF4Q9UBU7 674 aaPredicted RBP12.27□□□□□ -0.44
CDC42SE1-207ENST00000540998 GRM8O00222 908 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 GIGYF1O75420 1035 aaPredicted RBP12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 IGKV5-2P06315 115 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 ZNF75DP51815 510 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 CCT2P78371 535 aaKnown RBP12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 MTERF4Q7Z6M4 381 aaKnown RBP12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 GPATCH3Q96I76 525 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 CACNA1FO60840 1977 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 PLEKHG1Q9ULL1 1385 aa12.27□□□□□ -0.45
CDC42SE1-207ENST00000540998 RAB11FIP4Q86YS3 637 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 TNNT1P13805 278 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 CHAF1AQ13111 956 aaPredicted RBP12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 KSR2Q6VAB6 950 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 Q6ZUG5 572 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 FILIP1Q7Z7B0 1213 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 TM6SF1Q9BZW5 370 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 CLIP2Q9UDT6 1046 aa12.26□□□□□ -0.45
CDC42SE1-207ENST00000540998 ATP5J2-PTCD1G3V325 749 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 PTCD1O75127 700 aaKnown RBP12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 DMTNQ08495 405 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 GOLPH3LQ9H4A5 285 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 DBNLQ9UJU6 430 aaKnown RBP12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 TAF5LO75529 589 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 OTUD7BQ6GQQ9 843 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 RIC3Q7Z5B4 369 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 KCNB2Q92953 911 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 CLSTN2Q9H4D0 955 aa12.25□□□□□ -0.45
CDC42SE1-207ENST00000540998 H3BQV1 296 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 RNMTO43148 476 aaKnown RBP12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 EPB41L2O43491 1005 aaKnown RBP12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 TFCP2Q12800 502 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 MTX1Q13505 466 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 PTPN21Q16825 1174 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 TPD52L1Q16890 204 aaPredicted RBP12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 IFFO2Q5TF58 517 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 STOX1Q6ZVD7 989 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 MYD88Q99836 296 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 GPHNQ9NQX3 736 aaPredicted RBP12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 CRYBG1Q9Y4K1 1723 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 GOLGA6L6A8MZA4 724 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 FGD1P98174 961 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 SCRN1Q12765 414 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 ESCO1Q5FWF5 840 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 IP6K1Q92551 441 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 MARF1Q9Y4F3 1742 aaKnown RBP12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 CYP21A2P08686 494 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 APOBRQ0VD83 1088 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 PLA2G4DQ86XP0 818 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 DBNDD2Q9BQY9 259 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 GJB4Q9NTQ9 266 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 AXIN2Q9Y2T1 843 aa12.24□□□□□ -0.45
CDC42SE1-207ENST00000540998 RESTQ13127 1097 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 PSMA5P28066 241 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 C1orf141Q5JVX7 400 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 XAGE3Q8WTP9 111 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 ANKRD7Q92527 254 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 PHF8Q9UPP1 1060 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 N4BP2Q86UW6 1770 aaPredicted RBP12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 NPHP3Q7Z494 1330 aa12.23□□□□□ -0.45
CDC42SE1-207ENST00000540998 MED23Q9ULK4 1368 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 PDIA6Q15084 440 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 GTF3C6Q969F1 213 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 PSME1Q06323 249 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 COPS6Q7L5N1 327 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 SCAND2PQ9GZW5 306 aaPredicted RBP12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 ZNF609O15014 1411 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 HSP90AB3PQ58FF7 597 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 AKAP4Q5JQC9 854 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 ISM2Q6H9L7 571 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 UBE3BQ7Z3V4 1068 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 ERC1Q8IUD2 1116 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 LINS1Q8NG48 757 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 NEK1Q96PY6 1258 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 USP28Q96RU2 1077 aa12.22□□□□□ -0.45
CDC42SE1-207ENST00000540998 LTN1O94822 1766 aa12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 CTIFO43310 598 aaKnown RBP12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 RNF20Q5VTR2 975 aa12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 CCAR1Q8IX12 1150 aaKnown RBP12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 ST7Q9NRC1 585 aa12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 ELP1O95163 1332 aa12.21□□□□□ -0.45
CDC42SE1-207ENST00000540998 CTDNEP1O95476 244 aa12.21□□□□□ -0.46
CDC42SE1-207ENST00000540998 PDCP20941 246 aa12.21□□□□□ -0.46
CDC42SE1-207ENST00000540998 TDRD7Q8NHU6 1098 aaKnown RBP12.21□□□□□ -0.46
CDC42SE1-207ENST00000540998 FMNL2Q96PY5 1086 aa12.21□□□□□ -0.46
CDC42SE1-207ENST00000540998 BIN1O00499 593 aa12.2□□□□□ -0.46
CDC42SE1-207ENST00000540998 ALDH1L1O75891 902 aa12.2□□□□□ -0.46
CDC42SE1-207ENST00000540998 TTLL5Q6EMB2 1281 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms