RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 PTCH1Q13635 1447 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 ST18O60284 1047 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 TMF1P82094 1093 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 CHD1LQ86WJ1 897 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 FMNL3Q8IVF7 1028 aa11.07□□□□□ -0.64
CLIP1-214ENST00000540539 ERCC4Q92889 916 aaPredicted RBP11.07□□□□□ -0.64
CLIP1-214ENST00000540539 MKRN1Q9UHC7 482 aaKnown RBP11.07□□□□□ -0.64
CLIP1-214ENST00000540539 MYBL2P10244 700 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 USP8P40818 1118 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 CCNHP51946 323 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 ZNF483Q8TF39 744 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 DISP3Q9P2K9 1392 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 MINK1Q8N4C8 1332 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 ECM2O94769 699 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 GRIK3Q13003 919 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 NEDD9Q14511 834 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC144BQ3MJ40 725 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC93Q567U6 631 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC144CPQ8IYA2 1237 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC26Q8TAB7 109 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 KCNB2Q92953 911 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 TRIM6Q9C030 488 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 A1CFQ9NQ94 594 aaKnown RBP11.06□□□□□ -0.64
CLIP1-214ENST00000540539 NWD1Q149M9 1564 aa11.06□□□□□ -0.64
CLIP1-214ENST00000540539 ERLIN2O94905 339 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 GCFC2P16383 781 aaKnown RBP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 N4BP2L2Q92802 583 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 TMX3Q96JJ7 454 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 VEZTQ9HBM0 779 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 TRMT1Q9NXH9 659 aaKnown RBP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 MCM8Q9UJA3 840 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 CDC45O75419 566 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 SCRN1Q12765 414 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 FBXW10Q5XX13 1052 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 CC2D1AQ6P1N0 951 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 TMEM87AQ8NBN3 555 aa11.05□□□□□ -0.64
CLIP1-214ENST00000540539 TEX13AQ9BXU3 409 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLIP1-214ENST00000540539 STRCP1A6NGW2 1772 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 EME2A4GXA9 379 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-214ENST00000540539 ZNF75DP51815 510 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 ERC1Q8IUD2 1116 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 DZIP1LQ8IYY4 767 aaKnown RBP11.04□□□□□ -0.64
CLIP1-214ENST00000540539 CTCFLQ8NI51 663 aaPredicted RBP11.04□□□□□ -0.64
CLIP1-214ENST00000540539 ANKRD18BA2A2Z9 1011 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 KINO60870 393 aaKnown RBP11.04□□□□□ -0.64
CLIP1-214ENST00000540539 GPTP24298 496 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 LUZP1Q86V48 1076 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 PLA2G4DQ86XP0 818 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 FAM200AQ8TCP9 573 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 UBXN4Q92575 508 aa11.04□□□□□ -0.64
CLIP1-214ENST00000540539 FAM163BP0C2L3 166 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 EIF5P55010 431 aaKnown RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 CCAR2Q8N163 923 aaKnown RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 SOS1Q07889 1333 aaPredicted RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 EVC2Q86UK5 1308 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 AP1G2O75843 785 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 LIG3P49916 1009 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 ARID5BQ14865 1188 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 CCDC30Q5VVM6 783 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 LRRC8AQ8IWT6 810 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 KLHL23Q8NBE8 558 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 SH3GL3Q99963 347 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 PLEKHA4Q9H4M7 779 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 VPS18Q9P253 973 aa11.03□□□□□ -0.64
CLIP1-214ENST00000540539 CPSF2Q9P2I0 782 aaKnown RBP11.03□□□□□ -0.64
CLIP1-214ENST00000540539 TULP4Q9NRJ4 1543 aa11.02□□□□□ -0.64
CLIP1-214ENST00000540539 PSMD2Q13200 908 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 ZKSCAN2Q63HK3 967 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 WWC2Q6AWC2 1192 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 RBM33Q96EV2 1170 aaKnown RBP11.02□□□□□ -0.65
CLIP1-214ENST00000540539 FUT8Q9BYC5 575 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 TRIM5Q9C035 493 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 RTN2O75298 545 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 CCDC192P0DO97 292 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 RWDD2BP57060 319 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 ARMC3Q5W041 872 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 PROSER2Q86WR7 435 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-214ENST00000540539 CLIP2Q9UDT6 1046 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 AKAP2Q9Y2D5 859 aa11.02□□□□□ -0.65
CLIP1-214ENST00000540539 ZNF335Q9H4Z2 1342 aaPredicted RBP11.02□□□□□ -0.65
CLIP1-214ENST00000540539 SKILP12757 684 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 UBE2HP62256 183 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 TRAF1Q13077 416 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 CRYMQ14894 314 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 TRIM74Q86UV6 250 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 TRIM73Q86UV7 250 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 CADPS2Q86UW7 1296 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 RPS6KA3P51812 740 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 TBC1D25Q3MII6 688 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 CCDC158Q5M9N0 1113 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 CC2D2BQ6DHV5 1058 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 ITPRIPQ8IWB1 547 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 CNPY2Q9Y2B0 182 aa11.01□□□□□ -0.65
CLIP1-214ENST00000540539 PPFIA4O75335 1185 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 TADA3O75528 432 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 NF2P35240 595 aa11□□□□□ -0.65
CLIP1-214ENST00000540539 ARMCX6Q7L4S7 300 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms