RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	NLRP3	Q96P20	1036 aa		11.77	□□□□□ -0.53
NXF1-209	ENST00000531474		A0A0G2JLW4	131 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474		H0YIN7	160 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	DPEP1	P16444	411 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	CASP7	P55210	303 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	TGFB2	P61812	414 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	RPGR	Q92834	1020 aa	Known RBP	11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	SYT17	Q9BSW7	474 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	USP44	Q9H0E7	712 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	ANKRD31	Q8N7Z5	1873 aa		11.76	□□□□□ -0.53
NXF1-209	ENST00000531474	KIF13B	Q9NQT8	1826 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	PDE8A	O60658	829 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	UBTFL1	P0CB47	393 aa	Predicted RBP	11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	CTSW	P56202	376 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	4e-8	■□□□□ 10
NXF1-209	ENST00000531474	GCC1	Q96CN9	775 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	MEIS3	Q99687	375 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	WWC3	Q9ULE0	1092 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	PDZRN3	Q9UPQ7	1066 aa		11.75	□□□□□ -0.53
NXF1-209	ENST00000531474	DDX60	Q8IY21	1712 aa	Known RBP	11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	KLRG2	A4D1S0	409 aa	Predicted RBP	11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	GNAI3	P08754	354 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	SRGN	P10124	158 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	NPR1	P16066	1061 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	RGS3	P49796	1198 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	CRY2	Q49AN0	593 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	SMC5	Q8IY18	1101 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	SUCLG2	Q96I99	432 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	UTY	O14607	1347 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	COL11A2	P13942	1736 aa	Predicted RBP	11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	LAMB2	P55268	1798 aa		11.74	□□□□□ -0.53
NXF1-209	ENST00000531474	CCDC152	Q4G0S7	254 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	EPHA10	Q5JZY3	1008 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	STYK1	Q6J9G0	422 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	MASTL	Q96GX5	879 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	DDRGK1	Q96HY6	314 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	RBM17	Q96I25	401 aa	Known RBP	11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	PLA2G12B	Q9BX93	195 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	KIAA1551	Q9HCM1	1747 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	CHMP3	Q9Y3E7	222 aa		11.73	□□□□□ -0.53
NXF1-209	ENST00000531474	EIF5B	O60841	1220 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	KCNA3	P22001	575 aa		11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	HOXA10	P31260	410 aa	Predicted RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	FOXO4	P98177	505 aa		11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	SF3B3	Q15393	1217 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	DDX46	Q7L014	1031 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	CNKSR1	Q969H4	720 aa		11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	IPO9	Q96P70	1041 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	BICC1	Q9H694	974 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	PIM2	Q9P1W9	311 aa		11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	HDAC5	Q9UQL6	1122 aa		11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	LRRFIP2	Q9Y608	721 aa	Known RBP	11.72	□□□□□ -0.53
NXF1-209	ENST00000531474	GNAI2	P04899	355 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	DALRD3	Q5D0E6	543 aa	Known RBP	11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	LMBR1L	Q6UX01	489 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	ERICH6	Q7L0X2	663 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	TTLL6	Q8N841	843 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	ANKRD44	Q8N8A2	993 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	TTLL11	Q8NHH1	800 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	KAZALD1	Q96I82	304 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	GREM2	Q9H772	168 aa		11.71	□□□□□ -0.53
NXF1-209	ENST00000531474	ALDH1B1	P30837	517 aa		11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	PRPF40B	Q6NWY9	871 aa	Known RBP	11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	CRAMP1	Q96RY5	1269 aa		11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	C1orf115	Q9H7X2	142 aa		11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	SEC31B	Q9NQW1	1179 aa		11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	BCS1L	Q9Y276	419 aa		11.7	□□□□□ -0.54
NXF1-209	ENST00000531474	DLEC1	Q9Y238	1755 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	RTL9	Q8NET4	1388 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	CSF1R	P07333	972 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	ITGA6	P23229	1130 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	NUCB1	Q02818	461 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	IFIT5	Q13325	482 aa	Known RBP	11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	GRAP	Q13588	217 aa		11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	RABL6	Q3YEC7	729 aa	Predicted RBP	11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	GRAPL	Q8TC17	118 aa	Predicted RBP	11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	CDC5L	Q99459	802 aa	Known RBP	11.69	□□□□□ -0.54
NXF1-209	ENST00000531474	ANKRD18B	A2A2Z9	1011 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	PPEF1	O14829	653 aa	Predicted RBP	11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	HMMR	O75330	724 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	GPR162	Q16538	588 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	CCDC57	Q2TAC2	916 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	C8orf34	Q49A92	452 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	TAF7L	Q5H9L4	462 aa		11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	CELF1	Q92879	486 aa	Known RBP	11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	UPF2	Q9HAU5	1272 aa	Known RBP	11.68	□□□□□ -0.54
NXF1-209	ENST00000531474	C21orf2	O43822	256 aa		11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	BBOX1	O75936	387 aa		11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	YBX3	P16989	372 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	IGHMBP2	P38935	993 aa	Known RBP	11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	RPS8	P62241	208 aa	Known RBP	11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	CHD1L	Q86WJ1	897 aa		11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	ANKRD18A	Q8IVF6	992 aa		11.67	□□□□□ -0.54
NXF1-209	ENST00000531474	COL4A1	P02462	1669 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms