RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 IARSP41252 1262 aaKnown RBP15.22■□□□□ 0.03
TCOF1-214ENST00000515035 SYKP43405 635 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 TMEM266Q2M3C6 531 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 IDEP14735 1019 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 SYT1P21579 422 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 TAF7Q15545 349 aaPredicted RBP15.22■□□□□ 0.03
TCOF1-214ENST00000515035 SNX21Q969T3 373 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 PHACTR2O75167 634 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 TRIM21P19474 475 aaKnown RBP15.22■□□□□ 0.03
TCOF1-214ENST00000515035 CCDC121Q6ZUS5 278 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 PPFIA3O75145 1194 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 CTNNA2P26232 953 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 IGHMBP2P38935 993 aaKnown RBP15.22■□□□□ 0.03
TCOF1-214ENST00000515035 AOPEPQ8N6M6 819 aa15.22■□□□□ 0.03
TCOF1-214ENST00000515035 EXOC5O00471 708 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 CYLC1P35663 651 aaPredicted RBP15.21■□□□□ 0.03
TCOF1-214ENST00000515035 KIAA0753Q2KHM9 967 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 TCERG1LQ5VWI1 586 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 NBPF11Q86T75 865 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 HOMER2Q9NSB8 354 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 NSD2O96028 1365 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 TTC21BQ7Z4L5 1316 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 NLRP5P59047 1200 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 HSP90AA4PQ58FG1 418 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 IQCA1Q86XH1 822 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 NEK1Q96PY6 1258 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.21■□□□□ 0.036e-7■■■□□ 15.2
TCOF1-214ENST00000515035 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.21■□□□□ 0.03
TCOF1-214ENST00000515035 MAPKBP1O60336 1514 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 PTGS1P23219 599 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 C8orf34Q49A92 452 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 NECAB1Q8N987 351 aa15.21■□□□□ 0.03
TCOF1-214ENST00000515035 PTCD1O75127 700 aaKnown RBP15.21■□□□□ 0.02
TCOF1-214ENST00000515035 TSHZ3Q63HK5 1081 aa15.21■□□□□ 0.02
TCOF1-214ENST00000515035 DRC1Q96MC2 740 aa15.21■□□□□ 0.02
TCOF1-214ENST00000515035 TOM1O60784 492 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 ZPR1O75312 459 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 PLCD3Q8N3E9 789 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 DUOX2Q9NRD8 1548 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 CTAGE9A4FU28 777 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 GOLIM4O00461 696 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 RANBP6O60518 1105 aaKnown RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 TRIM47Q96LD4 638 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 UBA7P41226 1012 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 AMPD3Q01432 767 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 RAB3GAP1Q15042 981 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 SPTY2D1Q68D10 685 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 BICDL1Q6ZP65 573 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 ZSCAN29Q8IWY8 852 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 PYM1Q9BRP8 204 aaKnown RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 RRAGDQ9NQL2 400 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 TCP11L1Q9NUJ3 509 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 NUCB1Q02818 461 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 TYRO3Q06418 890 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 HDAC1Q13547 482 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 MRPS27Q92552 414 aaKnown RBP15.2■□□□□ 0.02
TCOF1-214ENST00000515035 CTAGE1Q96RT6 745 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 HMG20BQ9P0W2 317 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 SERPINA10Q9UK55 444 aa15.2■□□□□ 0.02
TCOF1-214ENST00000515035 IFI16Q16666 785 aaKnown RBP15.19■□□□□ 0.02
TCOF1-214ENST00000515035 ZNF287Q9HBT7 754 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 CETN1Q12798 172 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 GBP6Q6ZN66 633 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 ANKS4BQ8N8V4 417 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 GTF3C6Q969F1 213 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 MKNK2Q9HBH9 465 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 A0A1W2PRG0 241 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 SDSP20132 328 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 RNF41Q9H4P4 317 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-214ENST00000515035 EMILIN1Q9Y6C2 1016 aa15.19■□□□□ 0.02
TCOF1-214ENST00000515035 F13A1P00488 732 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 DNM1Q05193 864 aaKnown RBP15.18■□□□□ 0.02
TCOF1-214ENST00000515035 SYT10Q6XYQ8 523 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 CCDC114Q96M63 670 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 ZEB2O60315 1214 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 SPAG1Q07617 926 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 MICU3Q86XE3 530 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 KCNG4Q8TDN1 519 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 NUP153P49790 1475 aaKnown RBP15.18■□□□□ 0.02
TCOF1-214ENST00000515035 PTPRCP08575 1304 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 U2AF2P26368 475 aaKnown RBP eCLIP15.18■□□□□ 0.02
TCOF1-214ENST00000515035 LMOD1P29536 600 aaPredicted RBP15.18■□□□□ 0.02
TCOF1-214ENST00000515035 TUBB4BP68371 445 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 MAP3K12Q12852 859 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 BRF1Q92994 677 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 ZBTB9Q96C00 473 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 CALML4Q96GE6 196 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 KIF4AO95239 1232 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 USHBP1Q8N6Y0 703 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 SCLT1Q96NL6 688 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 PCDHB15Q9Y5E8 787 aa15.18■□□□□ 0.02
TCOF1-214ENST00000515035 ABCC10Q5T3U5 1492 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 RBM5P52756 815 aaKnown RBP eCLIP15.17■□□□□ 0.02
TCOF1-214ENST00000515035 SMC5Q8IY18 1101 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 CCDC144CPQ8IYA2 1237 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 TACC1O75410 805 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 ACEP12821 1306 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 CCDC160A6NGH7 325 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 RAB11FIP4Q86YS3 637 aa15.17■□□□□ 0.02
TCOF1-214ENST00000515035 MYD88Q99836 296 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms