RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SKILP12757 684 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 SYKP43405 635 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 TYRO3Q06418 890 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 SNW1Q13573 536 aaKnown RBP14.66□□□□□ -0.06
USP53-209ENST00000514665 MFSD6Q6ZSS7 791 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 TTC41PQ6P2S7 1318 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 EXOC5O00471 708 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 DYNC1I1O14576 645 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 DNA2P51530 1060 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 ALG1Q9BT22 464 aa14.66□□□□□ -0.06
USP53-209ENST00000514665 CFAP65Q6ZU64 1925 aaKnown RBP14.66□□□□□ -0.06
USP53-209ENST00000514665 CCDC194A0A1B0GVG4 234 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 CAVIN2O95810 425 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 KCNA6P17658 529 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 ANKIB1Q9P2G1 1089 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 NPHP3Q7Z494 1330 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 APOBRQ0VD83 1088 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 CATIPQ7Z7H3 387 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 ZFYVE9O95405 1425 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 ABCC10Q5T3U5 1492 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 SLC9C2Q5TAH2 1124 aa14.65□□□□□ -0.06
USP53-209ENST00000514665 SEPT11Q9NVA2 429 aaKnown RBP14.65□□□□□ -0.06
USP53-209ENST00000514665 GCP02774 474 aa14.65□□□□□ -0.07
USP53-209ENST00000514665 LMOD1P29536 600 aaPredicted RBP14.65□□□□□ -0.07
USP53-209ENST00000514665 HOXC9P31274 260 aa14.65□□□□□ -0.07
USP53-209ENST00000514665 AOPEPQ8N6M6 819 aa14.65□□□□□ -0.07
USP53-209ENST00000514665 MRPS27Q92552 414 aaKnown RBP14.65□□□□□ -0.07
USP53-209ENST00000514665 ZBTB43O43298 467 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 IL15P40933 162 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 TFCP2Q12800 502 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 CEP135Q66GS9 1140 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 ZNF444Q8N0Y2 327 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 PRIMPOLQ96LW4 560 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 NUP88Q99567 741 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 BICC1Q9H694 974 aaKnown RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 MAP3K5Q99683 1374 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 NBPF7P0C2Y1 421 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 CASQ1P31415 396 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 TTF1Q15361 905 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 PAG1Q9NWQ8 432 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 GNG11P61952 73 aa14.64□□□□□ -0.07
USP53-209ENST00000514665 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.64□□□□□ -0.07
USP53-209ENST00000514665 V9GYY5 206 aaPredicted RBP14.64□□□□□ -0.07
USP53-209ENST00000514665 MPHOSPH10O00566 681 aaKnown RBP14.63□□□□□ -0.07
USP53-209ENST00000514665 MAPK8IP2Q13387 824 aaPredicted RBP14.63□□□□□ -0.07
USP53-209ENST00000514665 HELBQ8NG08 1087 aaPredicted RBP14.63□□□□□ -0.07
USP53-209ENST00000514665 ZPR1O75312 459 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 TIMM10P62072 90 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 LUZP1Q86V48 1076 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 VAT1LQ9HCJ6 419 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 SEC63Q9UGP8 760 aaKnown RBP14.63□□□□□ -0.07
USP53-209ENST00000514665 CCDC171Q6TFL3 1326 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 SBNO2Q9Y2G9 1366 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 IDEP14735 1019 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 ZCRB1Q8TBF4 217 aaKnown RBP14.63□□□□□ -0.07
USP53-209ENST00000514665 LGR6Q9HBX8 967 aa14.63□□□□□ -0.07
USP53-209ENST00000514665 PRC1O43663 620 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 PTGS1P23219 599 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 ZNF76P36508 570 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 UBASH3AP57075 661 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 TRERF1Q96PN7 1200 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 GOLGA6L10A6NI86 522 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 TSPY2A6NKD2 308 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 ZFYP08048 801 aaPredicted RBP14.62□□□□□ -0.07
USP53-209ENST00000514665 TAF3Q5VWG9 929 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 JAKMIP3Q5VZ66 844 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 CRACR2AQ9BSW2 395 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 ZHX1Q9UKY1 873 aaPredicted RBP14.62□□□□□ -0.07
USP53-209ENST00000514665 AFMP43652 599 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 RUFY3Q7L099 469 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 MYO6Q9UM54 1294 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 UBA7P41226 1012 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 WTAPQ15007 396 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 SPA17Q15506 151 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 CADPS2Q86UW7 1296 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 CCDC148Q8NFR7 591 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 KCNG4Q8TDN1 519 aa14.62□□□□□ -0.07
USP53-209ENST00000514665 TEX13AQ9BXU3 409 aaPredicted RBP14.62□□□□□ -0.07
USP53-209ENST00000514665 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.62□□□□□ -0.07
USP53-209ENST00000514665 MAGI2Q86UL8 1455 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 PTPDC1A2A3K4 754 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 RXRAP19793 462 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 CCDC129Q6ZRS4 1044 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 DDX21Q9NR30 783 aaKnown RBP eCLIP14.61□□□□□ -0.07
USP53-209ENST00000514665 CGNQ9P2M7 1197 aaKnown RBP14.61□□□□□ -0.07
USP53-209ENST00000514665 CACNA2D4Q7Z3S7 1137 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 ZNF397Q8NF99 534 aaPredicted RBP14.61□□□□□ -0.07
USP53-209ENST00000514665 FAM227BQ96M60 508 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 PPP1R1BQ9UD71 204 aaPredicted RBP14.61□□□□□ -0.07
USP53-209ENST00000514665 STX8Q9UNK0 236 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 NDUFB9Q9Y6M9 179 aa14.61□□□□□ -0.07
USP53-209ENST00000514665 USP19O94966 1318 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 ZNF287Q9HBT7 754 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 DNAI1Q9UI46 699 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 SPTLC2O15270 562 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 TMEM132AQ24JP5 1023 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 FKBP15Q5T1M5 1219 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 DHX32Q7L7V1 743 aaKnown RBP14.6□□□□□ -0.07
USP53-209ENST00000514665 KDM6BO15054 1643 aa14.6□□□□□ -0.07
USP53-209ENST00000514665 SGSM2O43147 1006 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms