RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 RTFDC1Q9BY42 306 aaPredicted RBP12.48□□□□□ -0.41
NEDD9-211ENST00000508546 TMX4Q9H1E5 349 aaPredicted RBP12.48□□□□□ -0.41
NEDD9-211ENST00000508546 ZNRF3Q9ULT6 936 aa12.48□□□□□ -0.41
NEDD9-211ENST00000508546 ATP6V0A2Q9Y487 856 aa12.48□□□□□ -0.41
NEDD9-211ENST00000508546 GPTP24298 496 aa12.47□□□□□ -0.41
NEDD9-211ENST00000508546 KIF23Q02241 960 aaPredicted RBP12.47□□□□□ -0.41
NEDD9-211ENST00000508546 GIGYF2Q6Y7W6 1299 aaKnown RBP12.47□□□□□ -0.41
NEDD9-211ENST00000508546 PPP1R42Q7Z4L9 355 aa12.47□□□□□ -0.41
NEDD9-211ENST00000508546 SUPT20HQ8NEM7 779 aa12.47□□□□□ -0.41
NEDD9-211ENST00000508546 NLRP3Q96P20 1036 aa12.47□□□□□ -0.41
NEDD9-211ENST00000508546 MIS18AQ9NYP9 233 aa12.47□□□□□ -0.41
NEDD9-211ENST00000508546 RRP7AQ9Y3A4 280 aaKnown RBP12.47□□□□□ -0.41
NEDD9-211ENST00000508546 RBBP6Q7Z6E9 1792 aaKnown RBP12.47□□□□□ -0.41
NEDD9-211ENST00000508546 TAF1P21675 1872 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 ERBB4Q15303 1308 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 TCERG1O14776 1098 aaKnown RBP12.46□□□□□ -0.41
NEDD9-211ENST00000508546 EIF4A1P60842 406 aaKnown RBP12.46□□□□□ -0.41
NEDD9-211ENST00000508546 PARP10Q53GL7 1025 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 SLC10A5Q5PT55 438 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 DLK2Q6UY11 383 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 C3orf67Q6ZVT6 689 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 CCER1Q8TC90 406 aaPredicted RBP12.46□□□□□ -0.41
NEDD9-211ENST00000508546 ZBTB3Q9H5J0 574 aa12.46□□□□□ -0.41
NEDD9-211ENST00000508546 BRCA2P51587 3418 aa12.46□□□□□ -0.42
NEDD9-211ENST00000508546 PAPPA2Q9BXP8 1791 aa12.46□□□□□ -0.42
NEDD9-211ENST00000508546 MYL6BP14649 208 aa12.45□□□□□ -0.42
NEDD9-211ENST00000508546 PPP2R1AP30153 589 aa12.45□□□□□ -0.42
NEDD9-211ENST00000508546 GMPSP49915 693 aaPredicted RBP12.45□□□□□ -0.42
NEDD9-211ENST00000508546 CDC37L1Q7L3B6 337 aa12.45□□□□□ -0.42
NEDD9-211ENST00000508546 LRRC37AA6NMS7 1700 aa12.45□□□□□ -0.42
NEDD9-211ENST00000508546 ABCC4O15439 1325 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 BBOX1O75936 387 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 HIRAP54198 1017 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-211ENST00000508546 KIAA2012Q0VF49 1180 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 TNIP1Q15025 636 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 RGMBQ6NW40 437 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 SP8Q8IXZ3 490 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 TRPM4Q8TD43 1214 aa12.44□□□□□ -0.42
NEDD9-211ENST00000508546 CEP290O15078 2479 aa12.43□□□□□ -0.42
NEDD9-211ENST00000508546 DPP8Q6V1X1 898 aaPredicted RBP12.43□□□□□ -0.42
NEDD9-211ENST00000508546 MPNDQ8N594 471 aa12.43□□□□□ -0.42
NEDD9-211ENST00000508546 UTP14AQ9BVJ6 771 aaKnown RBP12.43□□□□□ -0.42
NEDD9-211ENST00000508546 BCL2L13Q9BXK5 485 aa12.43□□□□□ -0.42
NEDD9-211ENST00000508546 NEFMP07197 916 aa12.42□□□□□ -0.42
NEDD9-211ENST00000508546 SLC10A3P09131 477 aa12.42□□□□□ -0.42
NEDD9-211ENST00000508546 PKN2Q16513 984 aaKnown RBP12.42□□□□□ -0.42
NEDD9-211ENST00000508546 LRP10Q7Z4F1 713 aa12.42□□□□□ -0.42
NEDD9-211ENST00000508546 CNOT7Q9UIV1 285 aaKnown RBP12.42□□□□□ -0.42
NEDD9-211ENST00000508546 DUOX1Q9NRD9 1551 aa12.42□□□□□ -0.42
NEDD9-211ENST00000508546 DDX60Q8IY21 1712 aaKnown RBP12.42□□□□□ -0.42
NEDD9-211ENST00000508546 CENPFP49454 3210 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 KIAA0100Q14667 2235 aaKnown RBP12.41□□□□□ -0.42
NEDD9-211ENST00000508546 A0A0C4DFX4 3053 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 SHTN1A0MZ66 631 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 H7C1D1 291 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 RAD17O75943 681 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 DPF2Q92785 391 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 CSRNP1Q96S65 589 aa12.41□□□□□ -0.42
NEDD9-211ENST00000508546 COLQQ9Y215 455 aaPredicted RBP12.41□□□□□ -0.42
NEDD9-211ENST00000508546 COL6A3P12111 3177 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 POTEFA5A3E0 1075 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 YDJCA8MPS7 323 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 ZNF157P51786 506 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-211ENST00000508546 PDIA6Q15084 440 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 FBXO46Q6PJ61 603 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-211ENST00000508546 TMC4Q7Z404 712 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 USP48Q86UV5 1035 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 ZNF296Q8WUU4 475 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-211ENST00000508546 CCDC102AQ96A19 550 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 PLEKHF1Q96S99 279 aa12.4□□□□□ -0.42
NEDD9-211ENST00000508546 GBA2Q9HCG7 927 aaPredicted RBP12.4□□□□□ -0.42
NEDD9-211ENST00000508546 GRAPQ13588 217 aa12.39□□□□□ -0.43
NEDD9-211ENST00000508546 NFE2L2Q16236 605 aa12.39□□□□□ -0.43
NEDD9-211ENST00000508546 HSP90AB3PQ58FF7 597 aa12.39□□□□□ -0.43
NEDD9-211ENST00000508546 DDX46Q7L014 1031 aaKnown RBP12.39□□□□□ -0.43
NEDD9-211ENST00000508546 MICALL2Q8IY33 904 aa12.39□□□□□ -0.43
NEDD9-211ENST00000508546 GRAPLQ8TC17 118 aaPredicted RBP12.39□□□□□ -0.43
NEDD9-211ENST00000508546 HDAC9Q9UKV0 1011 aa12.39□□□□□ -0.43
NEDD9-211ENST00000508546 NLRP10Q86W26 655 aa12.38□□□□□ -0.43
NEDD9-211ENST00000508546 SLC17A8Q8NDX2 589 aa12.38□□□□□ -0.43
NEDD9-211ENST00000508546 THUMPD2Q9BTF0 503 aaKnown RBP12.38□□□□□ -0.43
NEDD9-211ENST00000508546 RANBP2P49792 3224 aaKnown RBP12.38□□□□□ -0.43
NEDD9-211ENST00000508546 SCN9AQ15858 1988 aa12.38□□□□□ -0.43
NEDD9-211ENST00000508546 PSME4Q14997 1843 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 ADM5C9JUS6 153 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 HCLS1P14317 486 aaPredicted RBP12.37□□□□□ -0.43
NEDD9-211ENST00000508546 RPS12P25398 132 aaKnown RBP12.37□□□□□ -0.43
NEDD9-211ENST00000508546 SAMD7Q7Z3H4 446 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 KRT26Q7Z3Y9 468 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 RASAL3Q86YV0 1011 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 C2orf69Q8N8R5 385 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
NEDD9-211ENST00000508546 SH3TC1Q8TE82 1336 aa12.37□□□□□ -0.43
NEDD9-211ENST00000508546 PSMD14O00487 310 aa12.36□□□□□ -0.43
NEDD9-211ENST00000508546 EIF2S2P20042 333 aaKnown RBP12.36□□□□□ -0.43
NEDD9-211ENST00000508546 TCIRG1Q13488 830 aa12.36□□□□□ -0.43
NEDD9-211ENST00000508546 WASHC4Q2M389 1173 aa12.36□□□□□ -0.43
NEDD9-211ENST00000508546 PROSER3Q2NL68 480 aa12.36□□□□□ -0.43
NEDD9-211ENST00000508546 PNNQ9H307 717 aaKnown RBP12.36□□□□□ -0.43
NEDD9-211ENST00000508546 BABAM1Q9NWV8 329 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms