RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CDC14CA4D256 554 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 CPNE3O75131 537 aaKnown RBP6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 PHACTR2O75167 634 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 SASH3O75995 380 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 TTC39BQ5VTQ0 682 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 VWA5B2Q8N398 1253 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 TRERF1Q96PN7 1200 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 GSX2Q9BZM3 304 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 ZFYVE28Q9HCC9 887 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 ABI2Q9NYB9 513 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 FOXD3Q9UJU5 478 aaPredicted RBP6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 WWC3Q9ULE0 1092 aa6.8□□□□□ -1.32
HMGB1P28-201ENST00000507778 TARSP26639 723 aaKnown RBP6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 XPCQ01831 940 aaPredicted RBP6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 SPEM2Q0P670 501 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 SV2AQ7L0J3 742 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 KRT25Q7Z3Z0 450 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 PMEPA1Q969W9 287 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 PNMA5Q96PV4 448 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 DUSP9Q99956 384 aaKnown RBP6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 EFCC1Q9HA90 598 aa6.79□□□□□ -1.32
HMGB1P28-201ENST00000507778 CD33P20138 364 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 C1orf127Q8N9H9 656 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 NANOS1Q8WY41 292 aaKnown RBP6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 SETDB2Q96T68 719 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 KIAA1522Q9P206 1035 aaPredicted RBP6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 CNTN3Q9P232 1028 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 PARP2Q9UGN5 583 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 HCN2Q9UL51 889 aa6.78□□□□□ -1.32
HMGB1P28-201ENST00000507778 GPR25O00155 361 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 RARAP10276 462 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 FGFR3P22607 806 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 CES1P23141 567 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 NEUROD1Q13562 356 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 GRIN2CQ14957 1233 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 FAM182BQ5T319 152 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 USPL1Q5W0Q7 1092 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 FBF1Q8TES7 1133 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 SLC30A3Q99726 388 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 CHRDQ9H2X0 955 aa6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.77□□□□□ -1.33
HMGB1P28-201ENST00000507778 NFKB1P19838 968 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 ITGAEP38570 1179 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 CTBSQ01459 385 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 BHMTQ93088 406 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 CCDC74AQ96AQ1 378 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 FRMD6Q96NE9 622 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 ZFATQ9P243 1243 aa6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 NXF1Q9UBU9 619 aaKnown RBP6.76□□□□□ -1.33
HMGB1P28-201ENST00000507778 EREGO14944 169 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 MMP20O60882 483 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 MAP3K6O95382 1288 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 VAMP1P23763 118 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 GNA15P30679 374 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 DAB2P98082 770 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 PSMD2Q13200 908 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 OR13H1Q8NG92 308 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 MRS2Q9HD23 443 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 RNF19AQ9NV58 838 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 NLRP2Q9NX02 1062 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 TLR7Q9NYK1 1049 aaKnown RBP6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 PRR12Q9ULL5 1215 aa6.75□□□□□ -1.33
HMGB1P28-201ENST00000507778 PHF20L1A8MW92 1017 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 SORBS3O60504 671 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 POLR3DP05423 398 aaPredicted RBP6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 PSAPP07602 524 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 TREML4Q6UXN2 200 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 TMC4Q7Z404 712 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 RAB44Q7Z6P3 723 aaPredicted RBP6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 NPAS3Q8IXF0 933 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 FAM161BQ96MY7 647 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 SPG7Q9UQ90 795 aa6.74□□□□□ -1.33
HMGB1P28-201ENST00000507778 CYP2E1P05181 493 aaPredicted RBP6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 BMP4P12644 408 aa6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 SOX18P35713 384 aa6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 VEGFBP49765 207 aa6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 GALNT12Q8IXK2 581 aa6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 EPS8L3Q8TE67 593 aaKnown RBP6.73□□□□□ -1.33
HMGB1P28-201ENST00000507778 C2CD2LO14523 706 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 GIPC1O14908 333 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 EDN3P14138 238 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 MX2P20592 715 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 IRS1P35568 1242 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 PLAURQ03405 335 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 HYAL2Q12891 473 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 MRPL58Q14197 206 aaKnown RBP6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 DHX32Q7L7V1 743 aaKnown RBP6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 KANSL3Q9P2N6 904 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 AK5Q9Y6K8 562 aa6.72□□□□□ -1.33
HMGB1P28-201ENST00000507778 H3BM21 787 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 GADD45BO75293 160 aaPredicted RBP6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 WFS1O76024 890 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 ZNF468Q5VIY5 522 aaPredicted RBP6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 PI16Q6UXB8 463 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 SYT9Q86SS6 491 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 NCAPG2Q86XI2 1143 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 BACH2Q9BYV9 841 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 NPHS2Q9NP85 383 aa6.71□□□□□ -1.34
HMGB1P28-201ENST00000507778 VTI1BQ9UEU0 232 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms