RNA–Protein interactions for RNA: ENST00000506368.5

SCLT1-208, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-208ENST00000506368 LRRFIP2Q9Y608 721 aaKnown RBP18.68■□□□□ 0.58
SCLT1-208ENST00000506368 CCP110O43303 1012 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 STX1AQ16623 288 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 ME3Q16798 604 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 CCDC144BQ3MJ40 725 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 CCDC144CPQ8IYA2 1237 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 CKAP2LQ8IYA6 745 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 FBXO41Q8TF61 875 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 AHDC1Q5TGY3 1603 aaPredicted RBP18.67■□□□□ 0.58
SCLT1-208ENST00000506368 TRPM3Q9HCF6 1732 aaPredicted RBP18.67■□□□□ 0.58
SCLT1-208ENST00000506368 USP6P35125 1406 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 LRRC37A3O60309 1634 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 PSDA5PKW4 1024 aaPredicted RBP18.67■□□□□ 0.58
SCLT1-208ENST00000506368 TPM1P09493 284 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 NAA30Q147X3 362 aaPredicted RBP18.67■□□□□ 0.58
SCLT1-208ENST00000506368 IQCB1Q15051 598 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 ELF2Q15723 593 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 FILIP1Q7Z7B0 1213 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 TXLNBQ8N3L3 684 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 CFAP45Q9UL16 551 aa18.67■□□□□ 0.58
SCLT1-208ENST00000506368 COL16A1Q07092 1604 aaPredicted RBP18.66■□□□□ 0.58
SCLT1-208ENST00000506368 TPRNQ4KMQ1 711 aa18.66■□□□□ 0.58
SCLT1-208ENST00000506368 NUTM2GQ5VZR2 741 aa18.66■□□□□ 0.58
SCLT1-208ENST00000506368 SRRTQ9BXP5 876 aaKnown RBP18.66■□□□□ 0.58
SCLT1-208ENST00000506368 DNAJC25Q9H1X3 360 aa18.66■□□□□ 0.58
SCLT1-208ENST00000506368 SOS2Q07890 1332 aaPredicted RBP18.66■□□□□ 0.58
SCLT1-208ENST00000506368 CCZ1BP86790 482 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 CCZ1P86791 482 aaPredicted RBP18.65■□□□□ 0.58
SCLT1-208ENST00000506368 RRS1Q15050 365 aaKnown RBP18.65■□□□□ 0.58
SCLT1-208ENST00000506368 NECTIN1Q15223 517 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 MUM1L1Q5H9M0 696 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 LMOD2Q6P5Q4 547 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 OSBPL5Q9H0X9 879 aaPredicted RBP18.65■□□□□ 0.58
SCLT1-208ENST00000506368 ZSCAN16Q9H4T2 348 aaPredicted RBP18.65■□□□□ 0.58
SCLT1-208ENST00000506368 CCDC69A6NI79 296 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 ST3GAL1Q11201 340 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 CWC27Q6UX04 472 aaKnown RBP18.65■□□□□ 0.58
SCLT1-208ENST00000506368 BICD2Q8TD16 824 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 CHMP4AQ9BY43 222 aa18.65■□□□□ 0.58
SCLT1-208ENST00000506368 SURF6O75683 361 aaKnown RBP18.64■□□□□ 0.57
SCLT1-208ENST00000506368 CDC37L1Q7L3B6 337 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 NUTM1Q86Y26 1132 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 CCDC150Q8NCX0 1101 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 GPATCH3Q96I76 525 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 NAT10Q9H0A0 1025 aaKnown RBP18.64■□□□□ 0.57
SCLT1-208ENST00000506368 SNRKQ9NRH2 765 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 ZRANB1Q9UGI0 708 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 V9GYY5 206 aaPredicted RBP18.64■□□□□ 0.57
SCLT1-208ENST00000506368 USP44Q9H0E7 712 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 IL1RAPL2Q9NP60 686 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 ANO10Q9NW15 660 aa18.64■□□□□ 0.57
SCLT1-208ENST00000506368 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.64■□□□□ 0.57
SCLT1-208ENST00000506368 BECN2A8MW95 431 aa18.63■□□□□ 0.57
SCLT1-208ENST00000506368 GPS2Q13227 327 aa18.63■□□□□ 0.57
SCLT1-208ENST00000506368 ATL3Q6DD88 541 aa18.63■□□□□ 0.57
SCLT1-208ENST00000506368 SNW1Q13573 536 aaKnown RBP18.62■□□□□ 0.57
SCLT1-208ENST00000506368 CCDC93Q567U6 631 aa18.62■□□□□ 0.57
SCLT1-208ENST00000506368 PRPF40BQ6NWY9 871 aaKnown RBP18.62■□□□□ 0.57
SCLT1-208ENST00000506368 TPCN1Q9ULQ1 816 aa18.62■□□□□ 0.57
SCLT1-208ENST00000506368 ERBB3P21860 1342 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 NR1I2O75469 434 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 EVI5LQ96CN4 794 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 ZNF446Q9NWS9 450 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 HMG20BQ9P0W2 317 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 SPG7Q9UQ90 795 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 FHOD1Q9Y613 1164 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 PIK3C2AO00443 1686 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 ALS2Q96Q42 1657 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 PPP1R42Q7Z4L9 355 aa18.61■□□□□ 0.57
SCLT1-208ENST00000506368 OVOS2A0A0J9YW53 1432 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 OVOS2Q6IE36 1432 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 KDRP35968 1356 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 SPATA31A3Q5VYP0 1347 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 ERICH4A6NGS2 130 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 USP27XA6NNY8 438 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 ADCK5Q3MIX3 580 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 TMCO3Q6UWJ1 677 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 EFCC1Q9HA90 598 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 CHMP3Q9Y3E7 222 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 PHLPP2Q6ZVD8 1323 aa18.6■□□□□ 0.57
SCLT1-208ENST00000506368 CEP57L1Q8IYX8 460 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 ABTB2Q8N961 1025 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 CABLES1Q8TDN4 633 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 MAP4K1Q92918 833 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 HDAC5Q9UQL6 1122 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 TNS3Q68CZ2 1445 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 ZRANB2O95218 330 aaKnown RBP eCLIP18.59■□□□□ 0.57
SCLT1-208ENST00000506368 PNMA6AP0CW24 399 aaPredicted RBP18.59■□□□□ 0.57
SCLT1-208ENST00000506368 TSGA10IPQ3SY00 556 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 CREB3L3Q68CJ9 461 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 BLOC1S2Q6QNY1 142 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 ERC1Q8IUD2 1116 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 PGBD1Q96JS3 809 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 LARP6Q9BRS8 491 aaKnown RBP18.59■□□□□ 0.57
SCLT1-208ENST00000506368 ECHDC1Q9NTX5 307 aa18.59■□□□□ 0.57
SCLT1-208ENST00000506368 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.59■□□□□ 0.572e-6■■■■□ 19.3
SCLT1-208ENST00000506368 ZBTB22O15209 634 aa18.58■□□□□ 0.57
SCLT1-208ENST00000506368 CAPN2P17655 700 aa18.58■□□□□ 0.57
SCLT1-208ENST00000506368 CLCN6P51797 869 aa18.58■□□□□ 0.57
SCLT1-208ENST00000506368 HNRNPH2P55795 449 aaKnown RBP18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms