RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 SPEF2Q9C093 1822 aa15.07■□□□□ 0
PDLIM5-208ENST00000504489 ABCC4O15439 1325 aa15.07■□□□□ 0
PDLIM5-208ENST00000504489 CDHR2Q9BYE9 1310 aa15.07■□□□□ 0
PDLIM5-208ENST00000504489 CHD4Q14839 1912 aa15.07■□□□□ 0
PDLIM5-208ENST00000504489 CHRNA5P30532 468 aa15.06■□□□□ 0
PDLIM5-208ENST00000504489 CCT4P50991 539 aaKnown RBP15.06■□□□□ 0
PDLIM5-208ENST00000504489 CRY2Q49AN0 593 aa15.06■□□□□ 0
PDLIM5-208ENST00000504489 C2CD5Q86YS7 1000 aa15.06■□□□□ 0
PDLIM5-208ENST00000504489 NLRP3Q96P20 1036 aa15.06■□□□□ 0
PDLIM5-208ENST00000504489 GRM8O00222 908 aa15.05■□□□□ -0
PDLIM5-208ENST00000504489 IRS4O14654 1257 aaPredicted RBP15.05■□□□□ -0
PDLIM5-208ENST00000504489 SRGNP10124 158 aa15.05■□□□□ -0
PDLIM5-208ENST00000504489 HCLS1P14317 486 aaPredicted RBP15.05■□□□□ -0
PDLIM5-208ENST00000504489 CASP7P55210 303 aa15.05■□□□□ -0
PDLIM5-208ENST00000504489 RTL5Q5HYW3 569 aaPredicted RBP15.05■□□□□ -0
PDLIM5-208ENST00000504489 INTS3Q68E01 1043 aaKnown RBP15.05■□□□□ -0
PDLIM5-208ENST00000504489 UBE3BQ7Z3V4 1068 aa15.05■□□□□ -0
PDLIM5-208ENST00000504489 SBF1O95248 1867 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 FER1L6Q2WGJ9 1857 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 UTYO14607 1347 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 STYK1Q6J9G0 422 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 JARID2Q92833 1246 aaPredicted RBP15.04■□□□□ -0
PDLIM5-208ENST00000504489 MASTLQ96GX5 879 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 C9orf78Q9NZ63 289 aaPredicted RBP15.04■□□□□ -0
PDLIM5-208ENST00000504489 PIM2Q9P1W9 311 aa15.04■□□□□ -0
PDLIM5-208ENST00000504489 PDE8AO60658 829 aa15.03■□□□□ -0
PDLIM5-208ENST00000504489 NPR1P16066 1061 aa15.03■□□□□ -0
PDLIM5-208ENST00000504489 HOXA10P31260 410 aaPredicted RBP15.03■□□□□ -0
PDLIM5-208ENST00000504489 SF3B3Q15393 1217 aaKnown RBP15.03■□□□□ -0
PDLIM5-208ENST00000504489 C3orf67Q6ZVT6 689 aa15.03■□□□□ -0
PDLIM5-208ENST00000504489 PLA2G12BQ9BX93 195 aa15.03■□□□□ -0
PDLIM5-208ENST00000504489 TNNQ9UQP3 1299 aa15.03■□□□□ -0
PDLIM5-208ENST00000504489 MS4A1P11836 297 aa15.02■□□□□ -0
PDLIM5-208ENST00000504489 DZIP1LQ8IYY4 767 aaKnown RBP15.02■□□□□ -0
PDLIM5-208ENST00000504489 CLUAP1Q96AJ1 413 aa15.02■□□□□ -0
PDLIM5-208ENST00000504489 USP44Q9H0E7 712 aa15.02■□□□□ -0
PDLIM5-208ENST00000504489 FARP1Q9Y4F1 1045 aaPredicted RBP15.02■□□□□ -0
PDLIM5-208ENST00000504489 C19orf67A6NJJ6 358 aa15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 ALDH1B1P30837 517 aa15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 TTLL6Q8N841 843 aa15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 RPGRQ92834 1020 aaKnown RBP15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 CNKSR1Q969H4 720 aa15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 ZNF622Q969S3 477 aaKnown RBP eCLIP15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 CRAMP1Q96RY5 1269 aa15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 DICER1Q9UPY3 1922 aaKnown RBP15.01□□□□□ -0.01
PDLIM5-208ENST00000504489 NBPF7P0C2Y1 421 aaPredicted RBP15□□□□□ -0.01
PDLIM5-208ENST00000504489 CTSWP56202 376 aa15□□□□□ -0.01
PDLIM5-208ENST00000504489 DALRD3Q5D0E6 543 aaKnown RBP15□□□□□ -0.01
PDLIM5-208ENST00000504489 FTSJ3Q8IY81 847 aaKnown RBP15□□□□□ -0.01
PDLIM5-208ENST00000504489 TMEM57Q8N5G2 664 aa15□□□□□ -0.01
PDLIM5-208ENST00000504489 RBM17Q96I25 401 aaKnown RBP15□□□□□ -0.01
PDLIM5-208ENST00000504489 LRRC37AA6NMS7 1700 aa15□□□□□ -0.01
PDLIM5-208ENST00000504489 GOLGB1Q14789 3259 aaKnown RBP15□□□□□ -0.01
PDLIM5-208ENST00000504489 PLIN1O60240 522 aa14.99□□□□□ -0.01
PDLIM5-208ENST00000504489 RLBP1P12271 317 aa14.99□□□□□ -0.01
PDLIM5-208ENST00000504489 EVX2Q03828 476 aa14.99□□□□□ -0.01
PDLIM5-208ENST00000504489 TTLL11Q8NHH1 800 aa14.99□□□□□ -0.01
PDLIM5-208ENST00000504489 CREBZFQ9NS37 354 aa14.99□□□□□ -0.01
PDLIM5-208ENST00000504489 RTL9Q8NET4 1388 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 A0A1B0GUL6 1792 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 CSF1RP07333 972 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 FOXO4P98177 505 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 PDE3AQ14432 1141 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 CCDC152Q4G0S7 254 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 DDX46Q7L014 1031 aaKnown RBP14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 HDAC5Q9UQL6 1122 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 BCS1LQ9Y276 419 aa14.98□□□□□ -0.01
PDLIM5-208ENST00000504489 COL4A1P02462 1669 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 GNAI3P08754 354 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 YBX3P16989 372 aaKnown RBP eCLIP14.97□□□□□ -0.011e-7■■□□□ 14.3
PDLIM5-208ENST00000504489 GPR162Q16538 588 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 PRPF40BQ6NWY9 871 aaKnown RBP14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 PANK1Q8TE04 598 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 KAZALD1Q96I82 304 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 SUCLG2Q96I99 432 aa14.97□□□□□ -0.01
PDLIM5-208ENST00000504489 BBOX1O75936 387 aa14.96□□□□□ -0.01
PDLIM5-208ENST00000504489 UBTFL1P0CB47 393 aaPredicted RBP14.96□□□□□ -0.01
PDLIM5-208ENST00000504489 EPHA10Q5JZY3 1008 aa14.96□□□□□ -0.01
PDLIM5-208ENST00000504489 MEIS3Q99687 375 aa14.96□□□□□ -0.01
PDLIM5-208ENST00000504489 WWC3Q9ULE0 1092 aa14.96□□□□□ -0.01
PDLIM5-208ENST00000504489 GRIN3BO60391 1043 aa14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 RRP1P56182 461 aaKnown RBP14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 GRAPQ13588 217 aa14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 RABL6Q3YEC7 729 aaPredicted RBP14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 LMBR1LQ6UX01 489 aa14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 PELP1Q8IZL8 1130 aaKnown RBP14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 GRAPLQ8TC17 118 aaPredicted RBP14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 C7orf43Q8WVR3 580 aa14.95□□□□□ -0.02
PDLIM5-208ENST00000504489 ZBTB7BO15156 539 aaPredicted RBP14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 TMC4Q7Z404 712 aa14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 ITPRIPQ8IWB1 547 aa14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 CCDC85AQ96PX6 553 aaPredicted RBP14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 BICC1Q9H694 974 aaKnown RBP14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 GREM2Q9H772 168 aa14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 SEC31BQ9NQW1 1179 aa14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 LTBP1Q14766 1721 aa14.94□□□□□ -0.02
PDLIM5-208ENST00000504489 PPEF1O14829 653 aaPredicted RBP14.93□□□□□ -0.02
PDLIM5-208ENST00000504489 C21orf2O43822 256 aa14.93□□□□□ -0.02
PDLIM5-208ENST00000504489 RPS8P62241 208 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms